Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C14
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085... 39 0.003
02_04_0049 + 19238794-19239003,19239359-19239505,19239595-192397... 31 0.64
12_02_1269 + 27462644-27463612 31 1.1
04_04_1600 + 34704527-34704758,34705393-34706777 30 2.0
06_01_1170 - 10002650-10004122 29 2.6
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 29 3.4
06_03_1218 - 28488661-28488757,28488924-28488988,28489352-284894... 29 3.4
02_02_0548 - 11403442-11404205,11404520-11404811,11404917-114050... 29 3.4
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 29 4.5
03_01_0642 - 4702726-4703052,4703127-4703193,4703280-4703360,470... 28 6.0
>11_05_0034 +
18507023-18507243,18507347-18507473,18508463-18508531,
18508620-18508763
Length = 186
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Frame = +3
Query: 195 FSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNG 374
F S T D+ + + RL Y+S++RG LE DL+L T+ +++++
Sbjct: 42 FLSGFTTTTQQNSASTTTIDLSSDESRRRLINRLVYRSKQRGFLELDLVLGTWVEQHIHS 101
Query: 375 FNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFD---------NEIMNLLKKHAKNE 527
+E ++++ + D++ W+ ++ P+ + +++ + L KH+ E
Sbjct: 102 MDEANIRALLQVLDLENP--DLWKWLTSQEQPPEAVNSNPVFIAVKSKVTDNLSKHSSPE 159
Query: 528 DKIALRQP 551
+ A QP
Sbjct: 160 TRSAPGQP 167
>02_04_0049 +
19238794-19239003,19239359-19239505,19239595-19239750,
19239870-19239992,19240073-19240241,19240700-19240782,
19240917-19241018,19241104-19241192,19241317-19241407,
19241734-19241847,19242371-19242447,19242534-19242612,
19242710-19242778,19243022-19243197,19243309-19243365,
19243460-19243550,19243644-19243742,19243878-19244063
Length = 705
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +3
Query: 327 ENDLLLST--FAKKYLNGFNEKQTMMYDRLINSPSNDW----DIFYWIVEKKPTPKEFDN 488
E+DL+ + F+ L +K MY+R IN P+ W D FYW ++K P E +
Sbjct: 49 EHDLVYPSAEFSADALVPSPKKYQKMYERSINDPAGFWSEIADAFYW--KEKWNPSEVCS 106
Query: 489 EIMNLLK 509
E +++ K
Sbjct: 107 ENLDVTK 113
>12_02_1269 + 27462644-27463612
Length = 322
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +3
Query: 276 EKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW----DIF 443
E+R RL + R R ++EN L A+ +Q ++ N+PS DW D
Sbjct: 115 ERRSYRLTFHRRHRALVENAYLPHVLAEGRAVTVRNRQRRLF---TNNPSADWSAYDDAR 171
Query: 444 YWIVEKKPTPKEFDNEIMNLLKKHAKNED 530
W K P F M+ ++K +D
Sbjct: 172 VWSHVKLEHPSTFATLAMDPVRKQEIIDD 200
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 302 VMQSCFTFLQRLLFLNIIKRNLHVGCIHVV 213
VM C F+QR L +N +++ + VGC+ +
Sbjct: 81 VMSGCILFIQRDLHINEVQQEVLVGCLSFI 110
>06_01_1170 - 10002650-10004122
Length = 490
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 165 NALKNVQKVAFSSNTTNNMDTTYMEIPLYDV 257
N L N+Q +F SNT ++ Y+E PL D+
Sbjct: 220 NFLLNLQSSSFVSNTFGQLERRYLERPLADM 250
>09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +3
Query: 102 IDKNNMNLIKMLHTRTLNLSYNALK----NVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQ 269
++ + +KM H+ NLSY LK N K+A +S +N +T Y P +
Sbjct: 839 LNLRTFSTLKMAHSIFKNLSYVQLKEMMLNNAKIANTSGVFSNSNTNYSPSPALSTQAVP 898
Query: 270 P 272
P
Sbjct: 899 P 899
>06_03_1218 -
28488661-28488757,28488924-28488988,28489352-28489448,
28489647-28489852,28489853-28490152
Length = 254
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 120 NLIKMLHTRTLNLSYNALKN---VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQP 272
NL K+LH LNLS+N+L + + FSS ++ +++ PL +++ P
Sbjct: 43 NLTKLLH---LNLSHNSLSGGLPMDSLLFSSIAVLDVSFNHLDGPLQELQSSNP 93
>02_02_0548 -
11403442-11404205,11404520-11404811,11404917-11405016,
11405049-11405458
Length = 521
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 84 RLSLSKIDKNNM-NLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVE 260
+LSL K+ N + N++K LH ++ NL+YN K++ V S NMD T + D+
Sbjct: 400 KLSL-KLQGNILGNVMKQLHDKSRNLNYNRHKSLPFVGEVSGA--NMDLTTWRHTV-DLT 455
Query: 261 KQQ 269
KQ+
Sbjct: 456 KQE 458
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 108 KNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRK 287
+NN L L + +N S N N VA S T + DVEK+QPLE +
Sbjct: 318 ENNAGLNLSLFGKHINESEN---NAPNVAVRSEPTKEPEEQSQRHVQNDVEKEQPLESQS 374
Query: 288 ARL 296
L
Sbjct: 375 VGL 377
>03_01_0642 -
4702726-4703052,4703127-4703193,4703280-4703360,
4703582-4703718,4703936-4704143,4704664-4704891,
4705310-4705450,4705538-4705794
Length = 481
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -1
Query: 330 FLTFLFFAIGNAILLYVS----PAVVVSQHHKEESPCRLYP 220
F+TFLF A G A+ +YV PA+VV H+++ R YP
Sbjct: 290 FITFLFQAYGRAVPVYVPVYLVPALVV---HRQDLLKRPYP 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,603,570
Number of Sequences: 37544
Number of extensions: 298845
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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