Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C13
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 94 2e-20
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 33 0.062
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 30 0.43
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 29 1.0
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 1.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 1.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 28 1.3
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 1.8
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.1
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 4.0
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 5.4
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 5.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 26 5.4
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.1
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 9.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 9.4
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 93.9 bits (223), Expect = 2e-20
Identities = 55/180 (30%), Positives = 99/180 (55%), Gaps = 3/180 (1%)
Frame = +2
Query: 221 LQADFEGRNPEDCDFHGIKQLLRQL--FLKSNVDLGGLAQIIISQNYIGSVVKQCLXXXX 394
+ DFE +P+ DFH K LL+QL + +NV+L LA +I+SQ +GS VK
Sbjct: 69 INVDFEFFDPQPIDFHAFKNLLKQLLGYDHTNVNLSALADLILSQPLLGSTVK------- 121
Query: 395 XXXXXXXXXXXXVFGVTTVVNITKRKNEPSVAQIRE-LLTKLSQDHADPRTKELIKYILA 571
+ + +V+N+ R++EP + Q+ ++++L++ ++ EL K +
Sbjct: 122 -----VDGNNSDPYAMLSVINLNTRRDEPVIKQLTSYIISRLAKSNSRLEN-ELQKLLEP 175
Query: 572 DDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRKNMLYNFKYLIWISKTYTTGES 751
+ GL++NER++N+P + P++ L E++ A +N YNF + + +S+TYT ES
Sbjct: 176 NSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINENEPYNFTHYLLLSRTYTEIES 235
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 32.7 bits (71), Expect = 0.062
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 83 FVYFAKMPNKKXKEIDTNSESEKEQDSGSEKDSDFDSDGN 202
F +F+K+PN K ++ D+ S DS + +D D+ N
Sbjct: 26 FGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.43
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -3
Query: 272 YRGSHNLLGYVLRNQPVALFHRHSCRLNQNQNLFRCL 162
+ S +L Y+LR+ P + F+R+S + N N FR L
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 470 KNEPSVAQIRELLTKLSQDHADPRTKELIKYILADDSQHTGLVINERILNIPA 628
KN PS + I +L+ + + R + LIK + D NE++ +P+
Sbjct: 15 KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPS 67
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +2
Query: 122 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 256
E+D + ++K++D + ++++ ++D N E++ + D E ED
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDED 128
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 122 EIDTNSESEKEQDS---GSEKDSDFDSDGNYVGEKELQADFEGRNPEDCDFHGIKQLLRQ 292
E+D NSESE+++ G K+ D Y EK + N E + Q++ Q
Sbjct: 416 ELDDNSESEEDEHGMTIGFSKELKAPPDPQYFTEKTGATTYVNGNDESLNVSDFPQIVEQ 475
Query: 293 LFLKS 307
L S
Sbjct: 476 EELSS 480
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Frame = +2
Query: 122 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD--FEGR--NPEDCDFH--GIKQ- 280
+I T+++ +K ++ G E SD D DGNY+ K L+++ +G+ N + +F G+ Q
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESNRRTKGKKGNGKASNFQSMGLNQT 79
Query: 281 LLRQLFLK 304
LLR +F K
Sbjct: 80 LLRAIFKK 87
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 119 KEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 253
+E D E ++E++ + D D + DG+ GE + + E E
Sbjct: 188 EEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 137 SESEKEQDSGSEKDSDFDSD 196
SESE+E+ S SE D D D D
Sbjct: 239 SESEEEESSESESDEDEDED 258
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 122 EIDTNSESEKEQDSGSEKDSD 184
E ++ SESE E++S SE++SD
Sbjct: 107 ESESESESESEEESESEEESD 127
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +2
Query: 440 VTTVVNITKRKNEPSVA-QIRELLTK-LSQDHADPRTKELIKYILADDSQHTGLVINERI 613
++ VVN T+ K + Q+ LT+ L++ DP ++++ Y+L + S+ ++NE I
Sbjct: 239 ISHVVNATRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWI 298
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 143 SEKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRN 247
+E + GSE DSD DSD + V +LQ + RN
Sbjct: 434 NEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRN 469
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 140 ESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDCDFHGIKQLLRQL 295
+ E ++ G E+DS FDSD + K + +D G + ED + ++ + R+L
Sbjct: 96 DDEAKECEGEEEDSVFDSDEEH-EVKPMFSDDSG-DEEDLELANMEAMSRKL 145
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 95 AKMPNKKXKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDCDFHGI 274
A+ PN K K DS E D++ S GNY + EL D + F
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYT-QFELSIDKADVSFSFARFLNG 279
Query: 275 KQLLRQLFLK 304
K ++++L LK
Sbjct: 280 KGIVKELQLK 289
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 294 SCLSSCLIPWKSQSSGLRPSKSACSSFSPT*LPSESKSESFSLP 163
S LSS L S+S+G +SA +SF+P+ + ES S+P
Sbjct: 200 SNLSSSLRS-SSKSAGFSLFESASNSFTPSSFIESANMESLSIP 242
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 74 TSSFVYFAKMPNKKXKEIDTNSESEKEQDSGSEKDSDFDSDGN 202
T S V M KK K + K +S S+ DSD DSD +
Sbjct: 49 TVSTVDNEHMNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 FAKMPNKKXKEIDTN----SESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 241
F PN K ++ + S+S K S E +S FD G + + +ADF G
Sbjct: 85 FLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRG 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,559
Number of Sequences: 5004
Number of extensions: 49368
Number of successful extensions: 218
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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