Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C12
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 31 0.17
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 29 0.67
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 0.89
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 29 1.2
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 28 2.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 4.7
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 27 4.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.3
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 26 8.3
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.3
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 26 8.3
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 8.3
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 235 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPSS 339
I+ E+S + +Q P S PP+ ALPA + PSS
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 29.5 bits (63), Expect = 0.67
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 247 RSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 390
+S + SL +P S T Q + L+ PSS AQ KP N I
Sbjct: 217 QSTLFSLNTAPFSATSQQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEI 264
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.89
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 82 IMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI--VYERSF 255
+ S+ PI + + S++ + PA P+ S P +I + P T + YE+
Sbjct: 276 VASSKPIKK--AWASVAKSKKKVTPAPAPAPESEPSKP--SIAPSQPSKTNVSAAYEKPA 331
Query: 256 MLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 390
LS P A PA + PS+ +A ST N++
Sbjct: 332 ELSSSSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINAV 376
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 380 DRGFCVL-AGCALGTEDGFFSRAAGSAHCGG-VWEIGDCRRDNMNDL 246
D C++ AG + GF R +A C G VW I CR +++L
Sbjct: 429 DGPMCLIGAGVGIAPFRGFVQRRLANAACTGKVWIIQGCRDQKLDEL 475
>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 262 SLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 390
S R S QTPP LP+ LL + P+A P +P+ NS+
Sbjct: 15 SKRSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 2.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 338 EDGFFSRAAGSAHCGGVWE 282
ED F+++A+G+ + GG W+
Sbjct: 36 EDNFYAKASGNLYLGGTWK 54
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 4.7
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = +1
Query: 64 TPRKFLIMSASPIARQATHSQSIPSRRVLI---TDPAQMPDVYSSTPGGTIYSTTPGGTR 234
TPRK L + SP HS+SI R P+ +P + GG + ++
Sbjct: 420 TPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSK 479
Query: 235 IVYERSFMLSLR----QSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 390
++ S ++ + +S + + P LPAA K + + AS P ++I
Sbjct: 480 VLPAMSPKVAPKFQGGRSSTAPSTPNKVLPAASAKAAPKL-QEKAASFDIPNKSTI 534
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 268 RQSPISQTPPQCALPAALLKNPS-SVPNAQPASTQKPRSNSIS 393
R+ P + +CA+ +LKNP+ S+ A ST +P S +S
Sbjct: 298 RERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 119 TANRFLQGGS*SRIPLKCLMSIPAHRAEPSTP--PLLEVQE 235
T N+ + GG P+ IPA AEP+ P P EV E
Sbjct: 875 TVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 145 VLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQT 291
VL+TD +P+V+SS G + P +R + E + ISQ+
Sbjct: 109 VLVTDEQDVPEVWSSKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQS 157
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.3
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Frame = +1
Query: 70 RKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGG---TIYSTTPGG--TR 234
RK I S P Q +S+PS++ T + S P T + P T
Sbjct: 676 RKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHTRQESLPSQQTTE 735
Query: 235 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPS-----SVPNAQPASTQKPRSNSISFD 399
+ R + +Q Q Q +LP+ S+P+ QP+ Q+ R S+
Sbjct: 736 TKHLRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQLRQESLPSQ 795
Query: 400 ESQET 414
+S E+
Sbjct: 796 QSSES 800
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 274 SPISQTPPQCALPAALLKNPSSV 342
+P P CALPA LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 97 PIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 231
P + Q + S + V+++ + + SSTP TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,664
Number of Sequences: 5004
Number of extensions: 71381
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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