Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C11
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.26
09_03_0040 + 11816056-11819069,11819837-11820428 32 0.45
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 31 0.79
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 3.2
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 29 5.6
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890... 29 5.6
03_05_0447 - 24421442-24422767 29 5.6
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 7.4
04_04_0437 + 25193263-25194627 28 7.4
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 7.4
07_03_1160 - 24430240-24431268 28 9.7
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 28 9.7
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 28 9.7
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 28 9.7
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 200 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 340
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 469 PLPHRVPVQGD-GGQGLRHPVQPRGRAQGHFLPPHRHV--EGDPAAAHRRPLP 618
P P PV GD G +G+ V +G A+G + P R V G P AA P P
Sbjct: 49 PPPPTAPVAGDDGSKGVEGVVANQGGAEGVAVSPDRSVPLSGGPTAASSLPPP 101
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.5 bits (68), Expect = 0.79
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = -1
Query: 591 WVSFDMP----VRG*KVPLSSPSRLDRVPETLSSISLYWDSVRQGLKGYPSSERPQRTRV 424
W SFD P V G + + + P + +Y ++ G+ GY S PQ
Sbjct: 170 WQSFDHPTDALVPGQSLLQGMILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYN 229
Query: 423 ETTNSPAGSRLPSVSTSPQFLGGCLSVFLK 334
++ R+P+ T F GC S+F++
Sbjct: 230 YVVSTNKSKRVPTTVT---FTNGCFSIFVQ 256
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 309 GSKSSANTEYDSASGA*IPTPESKFSTPDWMQS 211
G K A T + S P PE+K TPDW+QS
Sbjct: 100 GKKEEAETS-ERHSSPPPPPPEAKKVTPDWLQS 131
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 227 PIGCSQGGWIRMRSFCSSGCRILXLVRYFFSSDLESDXLELAETSLQFL 81
P+ S G ++R+ C + CR L FSS L+L++ S+Q L
Sbjct: 36 PLESSTGYLAKIRALCFTNCREFRLSDGAFSSGKSLRVLDLSDCSIQKL 84
>06_03_1384 +
29786028-29786657,29788581-29788711,29788987-29789028,
29789383-29789441,29789774-29790070,29790180-29790289,
29790966-29791070,29791201-29791263,29791766-29791933,
29792111-29792248
Length = 580
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +1
Query: 442 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQPRGRAQGHFLPPHRHVEGDPAAAHRRPLPV 621
P A G+P P + Q Q + P + RG G P H+ P A P P
Sbjct: 28 PPANGLPSTPPRQQAQAQA---QQVGTP-RRRGSKSGSTTPGHQ----TPGVAWPSPYPS 79
Query: 622 QGGRPLPAG 648
G PLPAG
Sbjct: 80 GGASPLPAG 88
>03_05_0447 - 24421442-24422767
Length = 441
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 27 DGCSSARKAATMVDAATLEKLEAGFSKLQG 116
DGC S+ ++ AA L +LEAG K G
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTG 92
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 442 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 534
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +2
Query: 179 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 304
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 447 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 340
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>07_03_1160 - 24430240-24431268
Length = 342
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +1
Query: 460 PLQPLPHRVPVQGDGGQGLRHPVQ-PRGRAQG---HFLPPHRHVEG-----DPAAAHRRP 612
P+QP P + P G L +P Q P+ G +PP +G +P+ + P
Sbjct: 101 PVQPCPDQPPQPKPDGPPLPNPNQPPQPNPNGPPKPDMPPMPKPDGLPNTYEPSRPDQPP 160
Query: 613 LPVQGGRPLP 642
P+ G PLP
Sbjct: 161 QPISDGPPLP 170
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Frame = +1
Query: 499 DGGQGLRHPVQPRGR------AQGHFLPPHRHVEGDPAAAHRRPLPVQGGRPLP 642
DGG+ R PVQ G A PPH P H +P P +G P
Sbjct: 67 DGGRTDRDPVQLAGLFAPVFGAAAGVQPPHLRAPPPPQVFHAQPKPGEGAMAAP 120
>02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 27.9 bits (59), Expect = 9.7
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = -3
Query: 454 LERAAAAHAGGDHELAGGVEVAERVHVSPVLGRVLVGLLEAIVVVLDDRVKELGEHGVRL 275
LER A GD ++ V + ++ + R G+ V + V+ G HG +
Sbjct: 830 LERRRAELDAGDQKIRELVSILDQ-RKDESIERTFKGVARHFREVFSELVQ--GGHGHLV 886
Query: 274 GVRRVDTDAGVQVLDTRLDAVKEGGSE 194
+++ D DAG + +D D +E SE
Sbjct: 887 MMKKKDGDAGDEDIDNDEDGPREPDSE 913
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 484 VPVQGDGGQGLRHPVQPRGRAQGHFL---PPHRHVEGDPAAAHRRP 612
+P Q QGLR + G H PP++ +E D AAA R P
Sbjct: 279 IPSQYKATQGLRPLEKHAGHVASHLRILPPPNKVLENDNAAASRPP 324
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,296,249
Number of Sequences: 37544
Number of extensions: 428244
Number of successful extensions: 1692
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -