Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C10
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.47 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 25/102 (24%), Positives = 45/102 (44%)
 Frame = +3

Query: 72  LDLGAKLLPESQLALSSKHYSSYGKSPFVRKIKEQYNYEIEKNPPEWEYVKRLLPFTTIP 251
           LDL ++L  + Q ++ S+HYS+       R I       IEK    W+Y    +P     
Sbjct: 286 LDLRSQLEYDLQTSIMSRHYST-------RAIV------IEKGQSIWDYDSTYIPKVKNK 332

Query: 252 KIIPKDSYPSGWVPPKEEALNHPYFLSRTKNAELPIYLKITY 377
           K   K    + W+ P+   +     + +T++  + IY +I +
Sbjct: 333 KAGSKHLLQNTWLDPEYPMIR----VHKTQSQTIDIYSRIGF 370


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 87  KLLPESQLALSSKHYSSYGKSPFVRKIKEQYNYEIEK-NPPEWEYVKRLLPFTTIPKIIP 263
           K + E++  +     + YG+ P   K+K  +N  +EK N  + +  K  + +  + K+IP
Sbjct: 42  KCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGK--IRYNLLKKVIP 99

Query: 264 K 266
           +
Sbjct: 100 E 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,987
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)