Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C08
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 181 1e-46
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 180 2e-46
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 29 0.84
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 3.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.5
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 5.9
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.8
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 7.8
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 181 bits (440), Expect = 1e-46
Identities = 92/160 (57%), Positives = 112/160 (70%)
Frame = +2
Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 352
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 353 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 532
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 533 HTGRLLACVASRPGQCGRADGYILXGKELEFYLRKIKSKR 652
GRL A V+SRPGQ GR DGYIL G+EL FYLR++ K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 94 YASXRXSALGRPAANTRLGPQRIH 165
Y R LGR +NTR+GP+RIH
Sbjct: 21 YRKKRKFELGRQPSNTRIGPKRIH 44
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 180 bits (438), Expect = 2e-46
Identities = 92/160 (57%), Positives = 112/160 (70%)
Frame = +2
Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 352
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106
Query: 353 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 532
PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL QF
Sbjct: 107 APFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQF 160
Query: 533 HTGRLLACVASRPGQCGRADGYILXGKELEFYLRKIKSKR 652
GRL A V+SRPGQ GR DGYIL G+EL FYLR++ K+
Sbjct: 161 AAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
Score = 31.9 bits (69), Expect = 0.090
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 94 YASXRXSALGRPAANTRLGPQRIH 165
Y R LGR +NTR+GP+RIH
Sbjct: 21 YRKKRKFELGRQPSNTRIGPKRIH 44
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.7 bits (61), Expect = 0.84
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +2
Query: 155 SVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 334
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 335 IVVVDATPFRQWYE 376
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 146 SVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 325
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 326 KNAIVVV 346
+ A+ +V
Sbjct: 188 ELALTIV 194
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 233 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 406
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 407 K 409
+
Sbjct: 310 Q 310
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 372 YHCLNGVASTTTIAFLTRVFVRTNS 298
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 294 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 208
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 629 DRTRVLCLXRCNHRRDHTDLGDSPRKPANAPCGIALXE 516
D + CL R H+RD + + RK N G L E
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,923
Number of Sequences: 5004
Number of extensions: 45820
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -