Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C08
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              241   5e-64
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           51   8e-07
SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)           29   3.6  
SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)                   29   3.6  
SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)                 29   4.7  
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_56341| Best HMM Match : PAP_assoc (HMM E-Value=5.9e-09)             28   6.2  
SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_11| Best HMM Match : E6 (HMM E-Value=2.2)                           28   6.2  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  241 bits (589), Expect = 5e-64
 Identities = 113/162 (69%), Positives = 131/162 (80%)
 Frame = +2

Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 352
           R+RGGN K+RA RLDT NFSWGSE  TRK RIIDVVYNASNNELVRTKTLVKN IV VD+
Sbjct: 31  RTRGGNRKFRAFRLDTENFSWGSESCTRKARIIDVVYNASNNELVRTKTLVKNCIVQVDS 90

Query: 353 TPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQF 532
           TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    RK  AR+  AKV   + EQF
Sbjct: 91  TPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCTRKLEARKANAKVAPGMEEQF 150

Query: 533 HTGRLLACVASRPGQCGRADGYILXGKELEFYLRKIKSKRAK 658
            TGRL ACV+SRPGQ GR DGYIL GKELEFY++K+K+++AK
Sbjct: 151 VTGRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKAK 192



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 85  VRPYASXRXSALGRPAANTRLGPQRIH 165
           ++P    R   LGRP ANT++G +RIH
Sbjct: 2   MKPLRHKRKFELGRPPANTKIGTKRIH 28


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/70 (31%), Positives = 43/70 (61%)
 Frame = +2

Query: 173 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 352
           ++ GG+TK +ALR++ G ++  S+    +  I+ V+++ +N E +    +VK +IV VD 
Sbjct: 44  KAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHSFANKEHIERNVIVKGSIVQVDN 103

Query: 353 TPFRQWYESH 382
            PF  W++ +
Sbjct: 104 KPFEDWFQEY 113


>SB_37792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 251 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 364
           T++ +I D++ N   N  VR +TL+ NA +++D   F+
Sbjct: 18  TKRKKIADILSNEIRN--VRERTLILNAALIIDICVFK 53


>SB_26394| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.88)
          Length = 842

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 526 AIPHGAFAGLRGESPRSVWSRR 591
           A PH A +G+R  SPR +W  R
Sbjct: 108 ACPHHAVSGVRVSSPRGIWCSR 129



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 526 AIPHGAFAGLRGESPRSVWSRRWL 597
           A PH A +G+R   PRS+W  R L
Sbjct: 139 AYPHHAVSGVRVSPPRSIWCSRVL 162



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 526 AIPHGAFAGLRGESPRSVWSRRWL 597
           A PH A +G+R   PRS+W  R L
Sbjct: 201 ACPHHAVSGVRVSPPRSIWCSRVL 224



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 526 AIPHGAFAGLRGESPRSVWSRR 591
           A PH A +G+R   PRS+W  R
Sbjct: 232 ACPHHAVSGVRVSPPRSIWCSR 253


>SB_8638| Best HMM Match : PP2C (HMM E-Value=6.5e-32)
          Length = 905

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 452 KRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPGQCGRADGYILXGK 613
           ++S+K   K +   +L  +EG      H G LL    S    C R  GY + G+
Sbjct: 133 EKSEKYTEKKIRSDKLTWIEGNEEGASHIGDLLLKYDSLVSSCSRRIGYDIQGR 186


>SB_4689| Best HMM Match : Dicty_CTDC (HMM E-Value=5.8)
          Length = 530

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -1

Query: 381 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLDALYTTSMIRVLRVEHS 241
           CD+ HC   +  T+T+  + +V    + +   ++   ++ V R +HS
Sbjct: 448 CDNDHCSQELCLTSTVDQIQQVLNNCDKIKTQVHVEGLVEVWRKDHS 494


>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3824

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 167  PXRSRGGNTKYRALRLDTGNFS 232
            P   +GGN +YR +  DTG FS
Sbjct: 1643 PDTGQGGNVEYRIVSPDTGKFS 1664


>SB_56341| Best HMM Match : PAP_assoc (HMM E-Value=5.9e-09)
          Length = 503

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 574 SVWSRRWLHLXRQRTRVLSKKD 639
           + W   W H  RQR R+++++D
Sbjct: 327 TAWENTWTHSRRQRRRIIAERD 348


>SB_4431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 12  CFFXPTHLGLXRAHWHQXRATGGQ 83
           C   PT  G  R HW   R  GGQ
Sbjct: 55  CLHGPTGYGPERCHWKYYRGRGGQ 78


>SB_11| Best HMM Match : E6 (HMM E-Value=2.2)
          Length = 485

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
 Frame = +2

Query: 359 FRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLA---KVEGA---- 517
           F  W +    L   + +G  + E +E + N    +KT + YL         K++GA    
Sbjct: 174 FEAWKDIRKVLLNYKNEGTGIVEVDEGVTNN--IEKTLKLYLISPNHEIDQKLKGAPEKD 231

Query: 518 --LXEQFHTGRLLACVASRPGQCGRADGYILXG 610
               E FH    L CV  +  +    DGY L G
Sbjct: 232 IYFYETFHFLGGLQCVPLQENEISITDGYALMG 264


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,873
Number of Sequences: 59808
Number of extensions: 402162
Number of successful extensions: 986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)