Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C06
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.9  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.9  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.9  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   5.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 537 FHTQCPITCLNTFR 578
           F TQCPI   NTFR
Sbjct: 217 FVTQCPIQQGNTFR 230



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 697 VQSIIVVAFVRRCESPILVRVFHIGESLFNV 605
           + +I+ V  V   +SP L   FH+    FNV
Sbjct: 576 LNAIVEVVLVDEVQSPNLSHPFHLHGYAFNV 606


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 537 FHTQCPITCLNTFR 578
           F TQCPI   NTFR
Sbjct: 217 FVTQCPIQQGNTFR 230


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 642 TKIGDSQRRTKATTMMDWTVKDRSHSIRLGQR-MSLKDPHLQSNMDPVKTXHL 797
           TK+ +S +R      M  T+K R  S  L Q+  S   PH Q  + P+   H+
Sbjct: 146 TKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPH-QGPLTPILYDHI 197


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 392 QPPRHYTERRDYYQNQQDLIP 454
           Q  R+Y    D YQ+ Q L+P
Sbjct: 172 QENRYYNNSPDQYQSYQILLP 192


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = +2

Query: 638 TNQNWGFATSNESDYDDGLDGKRPISFDKIRPKDV------IKRPAPPVEHGSSQNEXST 799
           +N N  F+  N    D G     PI+  K +PK V      ++    PV+   S+ E  T
Sbjct: 124 SNGNLKFSIDNILKADFGRRITDPINIRKCKPKTVVPEVGGVEEAKGPVDLSKSEPEKKT 183

Query: 800 KA 805
           ++
Sbjct: 184 ES 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,023
Number of Sequences: 336
Number of extensions: 3228
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)