Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C06
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0146 - 31976538-31978643,31978653-31978751                       32   0.48 
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   4.5  
08_01_0834 + 8118681-8118847,8119133-8119250,8119387-8119623           29   5.9  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     28   7.8  

>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 533 KLAAVVGAEVAASLPQQR-ARQAI*ISEGSDPVGFDNSLFFRYNVGGVDNHIRNLVAISS 357
           + AAVVGA+  A+LP    A +A+ +     P GF  ++ +R    G+ +    LVA SS
Sbjct: 37  RAAAVVGADTPAALPHTTIAVEAVPLQPSPSPPGFFKTVSYRQAFSGIAS---ELVAASS 93

Query: 356 YGVCL 342
           +   L
Sbjct: 94  HAPVL 98


>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 686 DGLDGKRPISFDKIRPKDVIKRPAPPVEHGSSQNEXSTKAPK 811
           D  D + PISF K     V  RP P  + GSS N    ++PK
Sbjct: 10  DNDDEEGPISF-KRSSTSVKNRPTPTKQEGSSGNAGPIRSPK 50


>08_01_0834 + 8118681-8118847,8119133-8119250,8119387-8119623
          Length = 173

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 546 QCPITCLNTFRVMSTRQRSRTLNKDSPIWKTRTK-IGDSQRRTKATTMMDWTVKDRSHSI 722
           Q  IT  N F    T Q S +      + K +T+ +G  +R+T +T +   T KD+  +I
Sbjct: 103 QLSITNGNQFEAQDTTQASSSFAHVVGLKKRQTRQVGQRERKTGSTNITKITSKDQKRTI 162

Query: 723 RLGQRM 740
              + M
Sbjct: 163 LANKLM 168


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 503  AASLPQQRARQ-AI*ISEGSDPVGFDNS 423
            A +LP Q  RQ AI + EGS  VG DN+
Sbjct: 1508 AGALPAQHTRQYAINLPEGSSTVGHDNN 1535


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,862,819
Number of Sequences: 37544
Number of extensions: 384471
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)