Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C06
         (822 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069161-1|AAL39306.1|  206|Drosophila melanogaster GH18955p pro...    30   3.3  
AE014298-1376|AAF46527.3|  206|Drosophila melanogaster CG1468-PA...    30   3.3  
AY094736-1|AAM11089.1|  346|Drosophila melanogaster GH28507p pro...    30   4.4  
AY035206-1|AAK59373.1| 1235|Drosophila melanogaster protein phos...    30   4.4  
AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal prot...    30   4.4  
AE014298-1662|AAF48076.1| 1108|Drosophila melanogaster CG1822-PC...    30   4.4  
AE014298-1661|AAN09639.1| 1235|Drosophila melanogaster CG1822-PB...    30   4.4  
AE013599-1425|AAF58549.2|  403|Drosophila melanogaster CG8854-PA...    30   4.4  
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...    29   7.7  
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...    29   7.7  

>AY069161-1|AAL39306.1|  206|Drosophila melanogaster GH18955p
           protein.
          Length = 206

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 683 DDGLDGKRPISFDKIRPK--DVIKRPAPPVEHGSSQNEXSTKAPKITT 820
           DD L+ K    FD   P+  DV+K+P  P+   ++ N  +T +   TT
Sbjct: 67  DDELNWKIRCDFDPSNPECGDVVKKPVAPIRPTTTTNPTTTTSRTTTT 114


>AE014298-1376|AAF46527.3|  206|Drosophila melanogaster CG1468-PA
           protein.
          Length = 206

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 683 DDGLDGKRPISFDKIRPK--DVIKRPAPPVEHGSSQNEXSTKAPKITT 820
           DD L+ K    FD   P+  DV+K+P  P+   ++ N  +T +   TT
Sbjct: 67  DDELNWKIRCDFDPSNPECGDVVKKPVAPIRPTTTTNPTTTTSRTTTT 114


>AY094736-1|AAM11089.1|  346|Drosophila melanogaster GH28507p
           protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 510 RPHHRSQFTFHTQCPITCLNTFRVMSTRQRSRTLNKDSPIWKTRTKI 650
           RPH +S+     QC + C    R   TR+RSR+  K+ P++  R+ I
Sbjct: 81  RPHTQSRRVSRAQCQLECCVPQR---TRRRSRSARKE-PLYTARSDI 123


>AY035206-1|AAK59373.1| 1235|Drosophila melanogaster protein
           phosphatase 1-bindingprotein Bifocal protein.
          Length = 1235

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 584 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 760
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 761 PVEHGSSQNEXSTKA 805
           P E  +   + S  A
Sbjct: 738 PAESAAGGAQRSFAA 752


>AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal
           protein.
          Length = 1107

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 584 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 760
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 682 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 736

Query: 761 PVEHGSSQNEXSTKA 805
           P E  +   + S  A
Sbjct: 737 PAESAAGGAQRSFAA 751


>AE014298-1662|AAF48076.1| 1108|Drosophila melanogaster CG1822-PC,
           isoform C protein.
          Length = 1108

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 584 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 760
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 761 PVEHGSSQNEXSTKA 805
           P E  +   + S  A
Sbjct: 738 PAESAAGGAQRSFAA 752


>AE014298-1661|AAN09639.1| 1235|Drosophila melanogaster CG1822-PB,
           isoform B protein.
          Length = 1235

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +2

Query: 584 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 760
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 761 PVEHGSSQNEXSTKA 805
           P E  +   + S  A
Sbjct: 738 PAESAAGGAQRSFAA 752


>AE013599-1425|AAF58549.2|  403|Drosophila melanogaster CG8854-PA
           protein.
          Length = 403

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 510 RPHHRSQFTFHTQCPITCLNTFRVMSTRQRSRTLNKDSPIWKTRTKI 650
           RPH +S+     QC + C    R   TR+RSR+  K+ P++  R+ I
Sbjct: 138 RPHTQSRRVSRAQCQLECCVPQR---TRRRSRSARKE-PLYTARSDI 180


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
           protein.
          Length = 2236

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 647 NWGFATSNESDYDDGLDGKRPISFDKIRPKDVIKRPA 757
           +W F  +  + YD  LD K+ I F K+R  + + RPA
Sbjct: 366 DWPFVETRAAVYD--LDMKQEIGFSKLRDGNYLSRPA 400


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
           epsilon protein.
          Length = 2220

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 647 NWGFATSNESDYDDGLDGKRPISFDKIRPKDVIKRPA 757
           +W F  +  + YD  LD K+ I F K+R  + + RPA
Sbjct: 366 DWPFVETRAAVYD--LDMKQEIGFSKLRDGNYLSRPA 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,052,913
Number of Sequences: 53049
Number of extensions: 650149
Number of successful extensions: 1846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)