Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C05
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 32 0.45
05_04_0220 - 19167485-19169290 31 1.4
01_01_1129 - 8948612-8950117,8951354-8951503 31 1.4
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 30 1.8
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914... 30 2.4
07_01_0878 + 7288950-7289231 29 3.2
10_07_0191 + 13934410-13934940 29 4.2
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 29 4.2
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758 29 4.2
11_01_0673 - 5491694-5493102,5493386-5493995 29 5.5
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 29 5.5
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 28 7.3
09_03_0097 + 12335425-12336197,12336438-12336618,12337409-123375... 28 7.3
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 28 7.3
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 28 7.3
09_06_0360 - 22510132-22510433,22510577-22510716,22510979-225110... 28 9.7
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 28 9.7
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 28 9.7
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 28 9.7
02_05_0832 - 32077490-32078782 28 9.7
02_04_0415 + 22706964-22707072,22707784-22708077,22708304-227084... 28 9.7
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422... 28 9.7
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 32.3 bits (70), Expect = 0.45
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Frame = -3
Query: 474 RTSTLAHCAATRSSGLK----TPKSTVPLWMRRRQSSLSVPMTHSAPESSASST------ 325
RTST C+A R S +K T S W RR + + +V +T S P S S
Sbjct: 50 RTSTA--CSAERLSHVKSSTRTSSSRPAPWWRRSRMAAAVAVTSSPPRPSTSPRLSWSSW 107
Query: 324 -GQNLGARLYEPRPSTTHRRK 265
L PRPST+ RR+
Sbjct: 108 EADELEEAATAPRPSTSRRRR 128
>05_04_0220 - 19167485-19169290
Length = 601
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 PCWTPRIRGRSASLEPTGWTVSAASTRGPLTSASSAPRIWSQRNGPTLTFWSPTN 488
PC P G +LE GW SA + S +A W +G L FW +N
Sbjct: 321 PCEAPWCAGPLGALESNGWVYSAHCS----FSLFTADAAWRCLDGKWLFFWGDSN 371
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +3
Query: 291 AARTNGPPSSVPCWTPRIRGRSASLEPTGWTVSAASTRGPLTSASSAPRIWSQRNGPTL 467
A+R + PP P P + G +S T W + T G S SS+ NG L
Sbjct: 400 ASRLSAPPFPYPLVPPALWGCLSSWPATAWNIPWIRTNGGCMSPSSSSNSSCSGNGSPL 458
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 300 TNGPPSSVPCWTPRIRGRSASLEPTGWTVSAASTRGPLTSASSA 431
T PPS +P +PR RS+SL P AST P +SASS+
Sbjct: 36 TPPPPSPIPSTSPRPTLRSSSLPP-------ASTPSPSSSASSS 72
>05_07_0004 +
26990250-26990516,26990877-26990931,26991286-26991461,
26991702-26991923,26992001-26992239,26992437-26992962,
26993042-26993315,26993391-26994009,26994082-26994121,
26994263-26994310,26994548-26994814,26994892-26995155,
26995260-26995904
Length = 1213
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 571 HRRGTIRQYFSVHYRHDATFEGSGSHPEFVGDQNVNVGPL-RCDQILGAEDAEVNGPLVD 395
HR T+R + H G H E V D N L R + A D ++GPL
Sbjct: 564 HRLSTVRNAHCISVVHKGKIAEQGHHDELVKDPNGAYSQLIRLQEAQQAIDPHLDGPLNK 623
Query: 394 AAETVQ 377
+++++
Sbjct: 624 RSQSLK 629
>07_01_0878 + 7288950-7289231
Length = 93
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 394 AAETVQPVGSNDALRPRILGVQHGTELGGPFVRAAAFH-NTQTQVPIR 254
A +VQP G A RPR G +HG G RAAAF + Q Q+ ++
Sbjct: 19 ARRSVQPFG---AARPRQPGSRHGDLKAGAGARAAAFPVSAQAQMVVQ 63
>10_07_0191 + 13934410-13934940
Length = 176
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 288 AAARTNG----PPSSVPCWTPRIRGRSASLEPTGWTVSAASTRGPLTSASSA 431
A+A TNG PP++ P PR +A+ P +AAS P T +A
Sbjct: 66 ASASTNGRRPSPPAATPSSAPRQAAFAAAAPPEATAAAAASPGSPSTCRRTA 117
>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 396 MRRRQSSLSVPMTHSAPESSASSTGQNLGARLYEPRPSTTHRRK 265
M+RR P+ SA E A+ T Q LG +P+P TT RR+
Sbjct: 949 MKRRTKVPEAPL--SAQEL-ATQTDQMLGEHNCDPKPETTRRRR 989
>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
Length = 415
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = -1
Query: 779 CPVA--TPPPCRPSRSIRTTISLCXRSATGPGRRISPILEILNTRTVCRLGAGCHRPRLP 606
C VA P P+ S TT + + P PIL+ L T R GA C +P
Sbjct: 267 CSVAYSMSPAMTPTSSSSTTTTTTHELSPAPA--FLPILDSLVTELAARGGASCRPLVIP 324
Query: 605 GGTALYSGAPRAP 567
A +G P
Sbjct: 325 SSAAAIAGIVGVP 337
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 641 RLGAGCHRPRLPGGTALYSGAPRAPTWNYPAVFFCSLP 528
+ G +P LP GTA G +P W Y A++F ++P
Sbjct: 59 KFALGFFKPALPEGTANTYGNVTSPGW-YLAIWFNNIP 95
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = -3
Query: 393 RRRQSSLSVPMTHSAPESSASSTGQNLGARLYEPRPSTTHRRKFPF 256
RRR+ L +P+T S P SS S+ G ARL P P RR+ P+
Sbjct: 38 RRRRRRLLLPLTPSPPRSS-STHG---SARLTPPLPLPLPRRQPPW 79
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 312 PSSVPCWTPRIRGRSASLEPTGWTV-SAASTRGPLTSASSA 431
P+S+PC P S S P+ V S +S R P +AS+A
Sbjct: 7 PTSIPCELPLALDPSVSARPSDRPVASQSSARPPFPAASAA 47
>09_03_0097 +
12335425-12336197,12336438-12336618,12337409-12337572,
12338132-12338393,12338488-12338604
Length = 498
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 279 LWKAAARTNGPPSSVPCWTPRIRGRSASL 365
+W GPP+ P WTPR R L
Sbjct: 105 IWADGNAVAGPPAPTPPWTPRPRRHGGML 133
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 565 VGARGAPEYNA--VPPGSRGR*HPAPKRHTVRVFRISSIGEILRPGPVADR 711
V A EYN + S G P + T + + E L+PGP+A+R
Sbjct: 278 VSVAEAAEYNRYLIGEASSGSGTPLMPKRTFETYIFALFNENLKPGPIAER 328
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 28.3 bits (60), Expect = 7.3
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +3
Query: 246 DPERMGTCVCVLWKAAARTNGPPSSVPC-WTPRIRGRSASLEPTGW----TVSAASTRGP 410
D R G VC W+ +AR N P PC P + P+G + + +S R P
Sbjct: 32 DRVRFGA-VCRQWRISARRNPLPRQFPCSRCPTGPSTACQTPPSGGCRSISTATSSCRTP 90
Query: 411 LTSASSAPRIWSQRNGPTLTFWSPTN 488
A+S S T W PT+
Sbjct: 91 RAPAASGS---SSSAATARTRWMPTD 113
>09_06_0360 -
22510132-22510433,22510577-22510716,22510979-22511049,
22511152-22511352,22511541-22511786,22512148-22512209,
22512314-22512620
Length = 442
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -1
Query: 644 CRLGA---GCHRPRLPGGTALYSGAPRAPTWN 558
CRL A CH P LP A Y G+P +P N
Sbjct: 12 CRLIAHRPSCHIPFLPPALARYLGSPSSPNPN 43
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 291 AARTNGPPSSVPCWTPRIRGRSASLEPTGWTVSAASTRGPLTSASSAP 434
AA + P++VPC P +AS +AAST P ++++AP
Sbjct: 339 AAAPSSAPAAVPCTAPPAAPAAASTAAP----AAASTAAPAAASTAAP 382
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 396 MRRRQSSLSVPMTHSAPESSASSTGQNLGARLYEPRPSTTHRRKFPFVP 250
+R R SSL P +P S Q + +E P+T H + PF P
Sbjct: 38 LRSRVSSLLPPQAEESPSSPPPRIDQ-IEPSGWESDPATAHPQHLPFEP 85
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -3
Query: 621 STPTPGWHSVVFRSTACTDVELSGSIFLFTTATTLRSKGLALIRSSLVTRTST-LAHCAA 445
+ PTP + F A D EL +F F + L+ G+A + SLV ++ A C
Sbjct: 398 TVPTPYVFLLRFIKAAGGDKELENMVFFF-SEMALKEYGMASLCPSLVAASAVYAAQCTL 456
Query: 444 TRS 436
RS
Sbjct: 457 KRS 459
>02_05_0832 - 32077490-32078782
Length = 430
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 291 AARTNGPPSSVPCWTPRIRGRSAS---LEPTGWTVSAASTRGP 410
A+ P S P W+PR+RG+ S +P T A + +GP
Sbjct: 224 ASSPRSPISKSPMWSPRLRGKVGSGVDFDPFS-TALAKAAKGP 265
>02_04_0415 +
22706964-22707072,22707784-22708077,22708304-22708416,
22708504-22709002,22709106-22709144,22709228-22709515,
22709766-22709905,22710468-22710960,22711082-22711356
Length = 749
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 627 MSSTPTPGWHSVVFRSTACTDVELSGSIF 541
++ TPGW SV + ST + V L S+F
Sbjct: 112 VNGVSTPGWFSVDYDSTGLSKVNLVQSLF 140
>01_03_0076 -
12241408-12241545,12241719-12241790,12242173-12242289,
12243307-12245127,12245361-12245810
Length = 865
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 721 HSVXGQRQVRVAGSLQY*RF*IPGQCVA*GPDVIDPDSRVAQRC 590
H V Q+++ A SL + PG+ VA GP+ ++ D R C
Sbjct: 149 HKVLKQKKLLNAPSLGFGALVSPGREVAPGPETVERDPRRCLNC 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,533,063
Number of Sequences: 37544
Number of extensions: 541634
Number of successful extensions: 1876
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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