Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C05
(785 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 32 0.40
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 30 2.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 2.9
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 29 3.8
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 28 6.6
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 32.3 bits (70), Expect = 0.40
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Frame = -3
Query: 627 MSSTPTPGWHSVVFRSTACTDVELSGSIFLFTTATTLRSKGLALIRSSLVTRTSTLAHCA 448
M STPT +ST T + + TT TT++S + + T T
Sbjct: 269 MKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTP 328
Query: 447 ATRSSGLKTPKSTVPLWMRRRQSSLSVPMT-HSAPESSASST 325
T S TP T P M+ ++ + P T S P + + T
Sbjct: 329 TTMKSTPTTP--TTPTTMKSTPTTPTTPTTMKSTPTTPTTPT 368
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 31.5 bits (68), Expect = 0.71
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = -3
Query: 654 PDSVSLRGRMSSTPTPGWHSVVFRSTAC--TDVELSGSIFLFTTATTLRSKGLALIRSSL 481
P L S+ T S + ST T+ E S +T TT S + ++
Sbjct: 274 PQQSMLWTNCSNLSTTTSSSTMLSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTP 333
Query: 480 VTRTSTLAHCAATRSSGLKTPKST-VPLWMRRRQSSLSVPMTHSAPESSASSTGQN 316
+ ++ST++ TR+S K ST VP +SS S PM A SS+S+T Q+
Sbjct: 334 MEQSSTVSSVQKTRTSEDKPSSSTTVPTSASTSESSTSSPM---AETSSSSTTSQS 386
>Z81528-4|CAB04281.1| 575|Caenorhabditis elegans Hypothetical
protein F35E2.5 protein.
Length = 575
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -3
Query: 582 STACTDVELSGSIFLFTTATTLRSKGLALIRSSLVTRTSTLAHCAAT-RSSGLKTPKSTV 406
+T T V + + + TTL + LAL ++ TRT+ AT + P +T
Sbjct: 346 TTKATTVLTTTPVKVTPATTTLPTTSLALETTTTATRTTAKITAVATVARTNTTQPPTTT 405
Query: 405 PLWMRRRQSSLSVPMTHSAPESSASSTGQN 316
PL S+ ++P T ++ S+ S+ G +
Sbjct: 406 PL-----SSTTALPTTLTSSSSTESTDGSS 430
>Z81117-1|CAB03312.1| 431|Caenorhabditis elegans Hypothetical
protein T06E6.1 protein.
Length = 431
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 306 RLYEPRPSTTHRRKFPFVPDPVLCS 232
RLY+PR +K PF+ +P++C+
Sbjct: 194 RLYDPRAQRRPVKKIPFMENPIMCT 218
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -3
Query: 624 SSTPTPGWHSVVFRSTACTDVELSGSIFLFTTATTLRSKGLALIRSSLVTRTSTLAHCAA 445
S+T T SVV +T + E + S TT TT+++ + + T T+T +
Sbjct: 279 STTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTTSAST 338
Query: 444 TRSSGLKTPKSTVPL 400
T S K P + + +
Sbjct: 339 TTISTTKPPTTQIDI 353
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Frame = -3
Query: 642 SLRGRMSSTPTPGWHSVVFRSTACTDVELSGSIFLFTTATTLRSKGLA-LIRSSLVTRTS 466
++ +ST TP +V T+ T V S S +T+ + + I S+ T TS
Sbjct: 270 TIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTS 329
Query: 465 TLAHCAATRSSGLKTPKSTVPLWMRRRQSSLSVPMTHSAPE--SSASSTGQN-LGARLYE 295
T A + + +S + ST+ S S+P T + PE S+ SS N + + L E
Sbjct: 330 T-ASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTT-TTPEITSTLSSLPDNAICSYLDE 387
Query: 294 PRPSTT 277
STT
Sbjct: 388 TTTSTT 393
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.5 bits (63), Expect = 2.9
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Frame = -3
Query: 642 SLRGRMSSTPTPGWHSVVFRSTACTDVELSGSIFLFTTATTLRSKGLA-LIRSSLVTRTS 466
++ +ST TP +V T+ T V S S +T+ + + I S+ T TS
Sbjct: 270 TIESTSTSTTTPTTTTVTSTVTSTTTVPTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTS 329
Query: 465 TLAHCAATRSSGLKTPKSTVPLWMRRRQSSLSVPMTHSAPE--SSASSTGQN-LGARLYE 295
T A + + +S + ST+ S S+P T + PE S+ SS N + + L E
Sbjct: 330 T-ASTSTSSTSTTQQSSSTITSSPSSTTLSTSIPTT-TTPEITSTLSSLPDNAICSYLDE 387
Query: 294 PRPSTT 277
STT
Sbjct: 388 TTTSTT 393
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 498 LIRSSLVTRTSTLAHCAATRSSGLKTPKSTV--PLWMRRRQSSLSVPMTHSAPESSASST 325
++ SS++ + + T +SG + P S + + M R S SA ++ S++
Sbjct: 325 VLSSSIIANEQSSSISHDTTTSGRELPSSLMGSTISMEMRSGGAS-----SATTTTTSNS 379
Query: 324 GQNLGARLYEPRPSTTHR 271
GQ L P P THR
Sbjct: 380 GQQTSRSLNAPHPPATHR 397
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
protein C04D8.1 protein.
Length = 1317
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -3
Query: 498 LIRSSLVTRTSTLAHCAATRSSGLKTPKSTV--PLWMRRRQSSLSVPMTHSAPESSASST 325
++ SS++ + + T +SG + P S + + M R S SA ++ S++
Sbjct: 203 VLSSSIIANEQSSSISHDTTTSGRELPSSLMGSTISMEMRSGGAS-----SATTTTTSNS 257
Query: 324 GQNLGARLYEPRPSTTHR 271
GQ L P P THR
Sbjct: 258 GQQTSRSLNAPHPPATHR 275
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = -3
Query: 534 TTATTLRSKGLALIRSSLVTRTSTLAHCAATRSSGLKTPKSTVPLWMRRRQSSLSV--PM 361
TT T+R + T+T + + ++ TP+ P + S+ S P
Sbjct: 608 TTTDTVRPTAQTISTRFTAPTTTTTSKPVESTTTEEDTPEHVPPAIVHMTASTPSGKNPP 667
Query: 360 THSA--PESSASSTGQNLGARLYEPRPSTTHRRKFP 259
T+ PE+S S+ AR P S T R +FP
Sbjct: 668 TYIPLHPETSQSTPTPTTSARSTRPTASVTRRPEFP 703
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
protein F22E10.1 protein.
Length = 1318
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = -2
Query: 571 HRRGTIRQYFSVHYRHDATFEGSGSHPEFVGDQNVNVGPLRCDQILGAEDAEVNGPLVDA 392
HR TIR+ + + + SG+H E V + + ++D E NG +
Sbjct: 612 HRLSTIREADKIVFFENGVIVESGNHEELVALGGRYAKLVEAQKFKESDDIEDNGD--EH 669
Query: 391 AETVQPVGSNDALRPR 344
E VG +D L R
Sbjct: 670 EEETSTVGRHDRLSSR 685
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,703
Number of Sequences: 27780
Number of extensions: 405670
Number of successful extensions: 1294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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