Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C05
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        59   5e-11
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        59   5e-11
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        59   5e-11
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
 Frame = +2

Query: 356 CVIGTDRLDCLRRIHKGTVDFGVFSPEDLVAAQW-----ANVDVLVTNELRMRARP---F 511
           C+ G DR +C+ ++ K   D     PED+  A       +N    V  ++R +  P   +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121

Query: 512 ERSVVAVVNRKILPDSSTSVHAVLRNTTLCHPGVG--VDDIRPLSD-TLSGYLESLVLER 682
               VAV++ K LP ++      LR    CH GVG  V    P++  T  G L +L    
Sbjct: 122 RYEAVAVIH-KDLPINNVQG---LRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLH--- 174

Query: 683 SCDPDLSLTXNRVKSLSEYFGKACKAGAWLPD 778
             DP+ S   N +++LS  F K C  G W PD
Sbjct: 175 --DPEYSARENELRALSSLFSKGCLVGTWSPD 204


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
 Frame = +2

Query: 356 CVIGTDRLDCLRRIHKGTVDFGVFSPEDLVAAQW-----ANVDVLVTNELRMRARP---F 511
           C+ G DR +C+ ++ K   D     PED+  A       +N    V  ++R +  P   +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121

Query: 512 ERSVVAVVNRKILPDSSTSVHAVLRNTTLCHPGVG--VDDIRPLSD-TLSGYLESLVLER 682
               VAV++ K LP ++      LR    CH GVG  V    P++  T  G L +L    
Sbjct: 122 RYEAVAVIH-KDLPINNVQG---LRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLH--- 174

Query: 683 SCDPDLSLTXNRVKSLSEYFGKACKAGAWLPD 778
             DP+ S   N +++LS  F K C  G W PD
Sbjct: 175 --DPEYSARENELRALSSLFSKGCLVGTWSPD 204


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
 Frame = +2

Query: 356 CVIGTDRLDCLRRIHKGTVDFGVFSPEDLVAAQW-----ANVDVLVTNELRMRARP---F 511
           C+ G DR +C+ ++ K   D     PED+  A       +N    V  ++R +  P   +
Sbjct: 62  CISGRDRYECIEKVGKKEADVVAVDPEDMYLAVKDNKLASNAGYNVIEQVRTKEEPHAPY 121

Query: 512 ERSVVAVVNRKILPDSSTSVHAVLRNTTLCHPGVG--VDDIRPLSD-TLSGYLESLVLER 682
               VAV++ K LP ++      LR    CH GVG  V    P++  T  G L +L    
Sbjct: 122 RYEAVAVIH-KDLPINNVQG---LRGLKSCHTGVGRNVGYKIPITKLTAMGVLNNLH--- 174

Query: 683 SCDPDLSLTXNRVKSLSEYFGKACKAGAWLPD 778
             DP+ S   N +++LS  F K C  G W PD
Sbjct: 175 --DPEYSARENELRALSSLFSKGCLVGTWSPD 204


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 419  GVFSPEDLVAAQWANVDVLVTNELRMRARPFERSVVAVVNRKILP 553
            G F   DLV A W ++ V   N        +E + + V    I P
Sbjct: 1517 GNFVVLDLVPATWYHLRVTAHNNAGFAVAEYEFATLTVTGGTIAP 1561


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 309 PPSSVPCWTP 338
           PPS +P W P
Sbjct: 335 PPSGIPNWVP 344


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 309 PPSSVPCWTP 338
           PPS +P W P
Sbjct: 335 PPSGIPNWVP 344


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 720  TLXSVSDRSGSQDLSNTRDSKYPDSVS 640
            T  S+S R+GS+D  +TRDS   D  S
Sbjct: 1399 TPLSIS-RAGSRDEDSTRDSTKLDRSS 1424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,876
Number of Sequences: 438
Number of extensions: 5401
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)