Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C04
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   1.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.5  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   7.9  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 330 YMRNVSCINIIDKYNATPTICFNMFFFFRSIGKP*LVARPY 452
           Y  + S  ++I  +N    I F MF++F +   P L  +P+
Sbjct: 503 YYESRSWFHLITNFNRIWVIHFGMFWYFTAFNSPTLYTKPF 543


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 461  GGGIGACHQLWLAYTAKEKKHIKAYRGSSIILIDYI-NARYIPHVTS*SSN 312
            G G     Q+W+AYT  E K I A++  + +  D I ++R+   V + ++N
Sbjct: 871  GTGFANDVQIWMAYTRCEVKSINAFKPDTTLPPDIISDSRFSSRVYACTAN 921


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 495 RLPNLSYRVRHRRILYNN 548
           R+ NLS ++ HR ILYN+
Sbjct: 165 RISNLSSKILHRLILYNS 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,058
Number of Sequences: 5004
Number of extensions: 63971
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)