Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C04
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           32   0.67 
03_02_0761 - 10963045-10963482,10963713-10963889,10964151-109642...    31   0.89 
11_06_0173 + 20891526-20891957                                         31   1.6  
05_04_0300 - 19969066-19969535,19971216-19972686                       29   4.7  

>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 802 CGAENLRVKSLLIFSYLGCIGREVVSCGRDVDVHVALSAGSVPTGAACTSASGRAGA 632
           C  +N +++ LL+    G    E+++CGR+    V    G V   AA  +A G  GA
Sbjct: 32  CEIDNAKME-LLLSQVSGKDITELIACGREKFASVPSGGGGVAVAAAAPAAGGAGGA 87


>03_02_0761 -
           10963045-10963482,10963713-10963889,10964151-10964261,
           10964982-10965227,10965571-10965630,10965729-10966034,
           10966626-10966769,10966994-10967392
          Length = 626

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 506 IWKAW-IAQRKMAGDDGGGIGACHQLWLAYTAKEKKHIKAYRGSSIILIDYINAR 345
           IW+ W + +RK     GG I    +L+ A T  + KHI A+ G +I+ I   N +
Sbjct: 179 IWQCWAVLERK-----GGNIRRARELFDAATVADAKHIAAWHGWAILEIKQGNIK 228


>11_06_0173 + 20891526-20891957
          Length = 143

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 441 ARPYPTTIITRHLPLCNPRLPNLSYRVRHRRILYN 545
           +RPYP   + RH+       PNL  RV+ R  L N
Sbjct: 90  SRPYPLAHLDRHVQHLRGGQPNLGLRVKRRETLTN 124


>05_04_0300 - 19969066-19969535,19971216-19972686
          Length = 646

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 516 RVRHRRILYNNLLPILLSDPNNSSFRCNRNSVRS*RL-DSAPA 641
           ++++RR++YN  +P+     NN+    NR S  S +L DS PA
Sbjct: 545 KLKNRRVMYNEAIPLTGKTANNTE-PFNRTSESSSKLPDSKPA 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,266,294
Number of Sequences: 37544
Number of extensions: 396189
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)