Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C04
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)                  29   6.4  
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)                    28   8.5  
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                28   8.5  
SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  28   8.5  

>SB_25640| Best HMM Match : Sec23_BS (HMM E-Value=5.1)
          Length = 291

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 611 NAVSVATEGTVVGIRQKNWKEIVVKDA 531
           N+  V   G VVG+ Q+NW++ VV  A
Sbjct: 230 NSSDVMMTGHVVGVLQRNWRDYVVSFA 256


>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
          Length = 360

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +3

Query: 477 LPLCNPRLPNLSYRVRHRRILYN---NLLPILLSDPNNSSFRCN 599
           L +   R  N  Y V  RR+L+N   +  P+ +  P N   +CN
Sbjct: 227 LAVMKVRFSNADYNVYTRRVLFNLPSHGFPLPMCSPGNHGIQCN 270


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 609 RCFCCNGRNCCWDPTEELEGDCCKGCGDDAPDTKDL 502
           RC   NG        +  +  CC  CGD  PD   L
Sbjct: 611 RCGPANGEGAAQPGPDHSQHGCCPKCGDHFPDLDTL 646


>SB_10126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 328 PVSHQILLPFISYNLEIGKLFA*RLIYHFVNL 233
           PV H  L  ++S +LEI +  A R+IY F NL
Sbjct: 357 PVFHNSLPDYLSQDLEIIRRRALRIIYPFKNL 388


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -1

Query: 748 CIGREVVSCGRDVDV-HVALSAGSVPTGAACTSASGRAGAESK 623
           C+   +  C R++   HV L+   VPT  AC  A   A    K
Sbjct: 268 CVSLSLSRCTREISFQHVGLTGFIVPTHVACADARNTAALSLK 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,627,656
Number of Sequences: 59808
Number of extensions: 473323
Number of successful extensions: 1221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)