Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_C01
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 42 9e-05
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 42 2e-04
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 29 0.65
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein... 29 0.86
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p... 29 1.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 2.0
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 27 3.5
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 27 3.5
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 27 4.6
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 6.1
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 8.0
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 8.0
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 8.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 8.0
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 8.0
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 42.3 bits (95), Expect = 9e-05
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 1/152 (0%)
Frame = +2
Query: 257 VFITGGTGFIGKQLIEKLLRSCDINKIYILIRRKKGKNVKERFSE-ITSEAVFNRLREKK 433
VF+TG G++G ++ L+ K+ L+R ++ +R + T+ V++
Sbjct: 1007 VFLTGANGYLGVFILRDLMTRSSNLKVIALVRASSEEHGLKRLKDSCTAYGVWDE----- 1061
Query: 434 PKFEEKLVPVEGDIAELDLGLTDHDRTIICEQVNVIFHVAATTRFDEPLKVATAVNLRGT 613
+ +K+ V GD+A + G+ + + E V+ + H A + P N+ GT
Sbjct: 1062 -SWAQKISVVNGDLALENWGIEERKWNKLTEVVDYVIHNGALVHWVYPYSKLRGPNVMGT 1120
Query: 614 REALSLGRDCKKLKTFVHVSTAYVHATHQRVN 709
AL L K K+ VS+ T VN
Sbjct: 1121 ITALKL-CSLGKGKSLSFVSSTSTVDTEYYVN 1151
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 41.5 bits (93), Expect = 2e-04
Identities = 29/123 (23%), Positives = 56/123 (45%)
Frame = +2
Query: 263 ITGGTGFIGKQLIEKLLRSCDINKIYILIRRKKGKNVKERFSEITSEAVFNRLREKKPKF 442
+TG TG+ G++ +E L++ +I+ + L+R + KER + +
Sbjct: 649 LTGATGYFGRRFLEYLVK-LNIS-VVCLVRESSDEAAKERLISLVPSLRIS--------- 697
Query: 443 EEKLVPVEGDIAELDLGLTDHDRTIICEQVNVIFHVAATTRFDEPLKVATAVNLRGTREA 622
E ++ + E+ GL D + E V+ I+H+AA + + + N+ GT+
Sbjct: 698 SENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPANVLGTKTV 757
Query: 623 LSL 631
L L
Sbjct: 758 LEL 760
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 371 VKERFSEITSEAVFNRLREKKPKFEEKLVPVEGDIAELDL 490
+K FSE ++ + + EK FEEKL ++ +++++DL
Sbjct: 750 IKRSFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDL 789
>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 29.1 bits (62), Expect = 0.86
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 257 VFITGGTGFIGKQLIEKLLRS 319
+F+TG GFIG +++ +LL +
Sbjct: 3 IFVTGAAGFIGSEIVRQLLEA 23
>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 392
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 380 RFSEITSEAVFNRLREKKPKFEEKLVPVEGDIAELDLGLTDHDRTIICEQVNVIFHVAAT 559
RF+++ S V K PKF +KL+ +IA +L + + ++ + E V + H
Sbjct: 312 RFADLISIIVDETGSVKNPKFSQKLLEEITNIAPTELSVLNEEQAMHLENVFLYRHYRVC 371
Query: 560 TRF 568
F
Sbjct: 372 VGF 374
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +2
Query: 197 IDEAIASGLSDVQKFYKNTNVFITGGTGFIGKQLI--EKLLRSCDINKI-----YILIRR 355
+DE L+ V KFYK+++ F + K L+ E R CD + L+RR
Sbjct: 1685 VDEIRREVLTSVLKFYKSSSSFSENLEAYYCKLLVLAELCYRLCDAQTVSQKAPNHLLRR 1744
Query: 356 KKGKNVK 376
+ +NVK
Sbjct: 1745 SQDQNVK 1751
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 699 RG*TQRSTKNSILAHGLLKLCWR*QRNXMRNNST 800
RG + ++ N + AHG + + R RN RNNS+
Sbjct: 568 RGAPRNNSSNDLHAHGGMPVNMRGPRNTSRNNSS 601
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 257 VFITGGTGFIGKQLIEKLLRS 319
V +TG TGFIG + E+LL++
Sbjct: 6 VLVTGVTGFIGAHVAEQLLQA 26
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 332 KIYILIRRKKGKNVKERFSEIT 397
+IY I K GKN KE FS+ T
Sbjct: 398 RIYDTILEKHGKNYKEAFSDTT 419
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 574 LIKPSRRSHVEYHIYLLAYYRSVVVRQPQVQFSDITFHRHQLLFKFRFF 428
LIKP R + +Y +YL + R V+F I + LLF F+
Sbjct: 690 LIKPERYNLFKYRVYLPQFLPPTDSR-TLVEFQTIVYTNSTLLFDGSFY 737
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 8.0
Identities = 25/125 (20%), Positives = 52/125 (41%)
Frame = +2
Query: 137 SITMDPAAAIELEILNRQKPIDEAIASGLSDVQKFYKNTNVFITGGTGFIGKQLIEKLLR 316
SI+ D ++ I + + I GL+ QK K+++V + + I +L
Sbjct: 229 SISHDTFLSLPCHISMHTSYMTQGILEGLT--QKISKHSDV-LNRDAMYSKISRISRLPN 285
Query: 317 SCDINKIYILIRRKKGKNVKERFSEITSEAVFNRLREKKPKFEEKLVPVEGDIAELDLGL 496
+N + + GK K ++ + + P+ +KL+PV + E++
Sbjct: 286 YLTVNFVRFYWKASIGKKAKI-LRKVKFPFELDAVEFCTPELSQKLIPVRDKLREIEKND 344
Query: 497 TDHDR 511
+H+R
Sbjct: 345 EEHER 349
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 356 KKGKNVKERFSEITSEAVFNRLREKKPKFEEKLVPVEGDIAELDLGLTD 502
+K K ++ EI + V+ L + KP+ E + D E+D +TD
Sbjct: 709 RKTKVDRDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTD 757
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 329 NKIYILIRRKKGKNVKERFSEITSEAVFNRLREKKPKFEE 448
NKI RR+KGK K E ++ + FN + E + FE+
Sbjct: 563 NKIDTSKRRRKGKRRKRVSDEHSASSNFNEI-ESQASFEQ 601
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 617 EALSLGRDCKKLKTFVHVSTAYVHATHQRVNTEV 718
EA+ + +D K++ + +H + + QRVNTE+
Sbjct: 37 EAVIVSKDAKQVLSLLHELKLFENFLWQRVNTEM 70
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 678 AVETWTKVLSFLQSLPKLKASLVPRRL 598
A+E W+ L ++Q LP+ L+P L
Sbjct: 685 AMELWSTFLMYIQKLPETFTLLIPHLL 711
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,394
Number of Sequences: 5004
Number of extensions: 73511
Number of successful extensions: 231
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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