Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C01
         (871 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)              140   1e-33
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.025
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)           32   0.70 
SB_14347| Best HMM Match : Protamine_P2 (HMM E-Value=5.2)              32   0.70 
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         31   1.2  
SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)             29   3.7  
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  
SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)                   29   6.5  
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score =  140 bits (339), Expect = 1e-33
 Identities = 83/216 (38%), Positives = 118/216 (54%), Gaps = 1/216 (0%)
 Frame = +2

Query: 221 LSDVQKFYKNTNVFITGGTGFIGKQLIEKLLRSCDINK-IYILIRRKKGKNVKERFSEIT 397
           +  +Q F+ +  V ITGGTGF+GK L+EKLLRSC   K IY+L R +     ++R   + 
Sbjct: 1   MDSIQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNML 60

Query: 398 SEAVFNRLREKKPKFEEKLVPVEGDIAELDLGLTDHDRTIICEQVNVIFHVAATTRFDEP 577
              +F  +RE  P   +K+  + GDIAE DLGL+  D  +I   V ++FH AAT RFDE 
Sbjct: 61  QTRLFQNVRENDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDEE 120

Query: 578 LKVATAVNLRGTREALSLGRDCKKLKTFVHVSTAYVHATHQRVNTEVHEEFYPCTWTPEA 757
           L+V                  C   + FVHVS+ Y +     V+    E+ YP +  PE 
Sbjct: 121 LRVFFI---------------CP--QAFVHVSSTYANCDRDVVD----EKIYPPSIEPEK 159

Query: 758 MLAIAEKLXAEQLDAITPSIIKGWPNTYTFEKALAE 865
           +++  E +  + + AITP +I   PNTYTF K+LAE
Sbjct: 160 LISSLEWMSDDMVKAITPYVIDQRPNTYTFTKSLAE 195


>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
 Frame = +2

Query: 464 EGDIAELDLGLTDHDRTII-CEQVNVIFHVAATTRFDEPLKVA---TAVNLRGTREALSL 631
           +GDI E      +H + I   EQ++ + H AA +  D     +   T  N+ GT   +++
Sbjct: 54  KGDICE-----ANHLKYIFQAEQIDTVLHFAAQSHVDNSFWSSLDFTKTNVYGTHVLINV 108

Query: 632 GRDCKKLKTFVHVSTAYVHATHQRVNTEVHEEFYPCTWTP--EAMLAIAEKLXAEQLDAI 805
             + K +K F+HVST  V+  +  +  ++H E  P   +    A  A AE +    L++ 
Sbjct: 109 AHEAK-IKKFIHVSTDEVYGGNSSLG-DMHSESSPLRPSNPYAASKAAAECIVMSYLESF 166

Query: 806 T-PSIIKGWPNTY 841
             P II    N Y
Sbjct: 167 KFPVIITRSNNVY 179


>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
          Length = 116

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = +2

Query: 257 VFITGGTGFIGKQLIEKL-LRSCDINKIYILIRRKKG-KNVKERFSEITS--EAVFNRLR 424
           + +TGGTG +G  L+ +L L++  I  IY   R K+    VK  FS  T+  + +FN+++
Sbjct: 2   ILVTGGTGLVGSHLLYELALKNLPIKAIY---RTKESLATVKRVFSYFTTNVDELFNKIQ 58


>SB_14347| Best HMM Match : Protamine_P2 (HMM E-Value=5.2)
          Length = 135

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 299 IEKLLRSCDINKIYILIRRKKGKNVKERFSEITS---EAVFNRLREKKPKFEEKLVPVEG 469
           I+     C+I +    +R+K+ K V    SE      EA+FNRL  ++ K  +  +PV G
Sbjct: 10  IDLCTEMCEIQRGLSAVRQKRIKIVANMRSESVRSPFEALFNRLDRRRRKRGQPFLPVRG 69

Query: 470 DI 475
           ++
Sbjct: 70  EV 71


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +2

Query: 266 TGGTGFIGKQLIEKLLRSCDINKIYILIRRKKGKNVKERFSEITSEA 406
           T  + FI  QLI KL R  +I+    +IR +K +NVK   S + +EA
Sbjct: 264 TAESSFIMSQLISKLDRKDNIDFGRDMIRERKQENVKNLISWLLNEA 310


>SB_31098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 651 SFLQSLPKLKASLVPRRLTAVATFSGSSNLVVAATWNITF 532
           S +Q+L     S+ P     +   S SS+L    TW+ITF
Sbjct: 131 SRIQTLESFAGSVAPADFVIIGNSSSSSSLANGLTWSITF 170


>SB_4967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 350 RRKKGKNVKERFSEITSEAVFNRLREKKPKFEEK----LVPVEGDIAELDLGLTDHDR 511
           R + G+  ++R + +  EA   R  +KK   E +     VP+ G + E D+ +T+H R
Sbjct: 103 RLEPGETDEDRLALLREEAKMKRQEKKKKSKESENKKDFVPIPGQLFEGDIVMTEHFR 160


>SB_27528| Best HMM Match : Epimerase (HMM E-Value=3.2e-06)
          Length = 441

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 257 VFITGGTGFIGKQLIEKLLRSCDINKIYILIRRKKGKNVKERFSEITS 400
           V + GG GFIG +++ +L++  D   I I+ R     + KER    TS
Sbjct: 28  VLVFGGNGFIGSEVVSRLIKQGD--DITIVNRGNWYFDSKERIKPYTS 73


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 681 YAVETWTKVLSFLQSLPKLKASLVPRRLTAVATFSGSSN 565
           Y V T+TKV +FL SLP      V +  + VA   G+ N
Sbjct: 282 YRVGTFTKVFTFLASLPTAVLDTVYQIRSPVAVPQGAKN 320


>SB_30014| Best HMM Match : OTU (HMM E-Value=4.7e-07)
          Length = 588

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 596 VNLRGTREALSLGRDCKKLKTFVHVSTAYVHATHQRVNTEVHE 724
           ++LRGTREAL L  D  + K FV +         Q +  +V++
Sbjct: 180 ISLRGTREALVLKADHSEHKYFVQIDNPEAPTIRQSMWIKVYD 222


>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1299

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 357  KKGRMSRRDFQRLRQRLYSIAYGRKNRNLKRSWC 458
            K+ R  +R  +R R+R       R+NR  +R WC
Sbjct: 1209 KRRRKRKRRRKRKRRRKRKSLMSRENRRFRRMWC 1242


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 347  IRRKKGKNVKERFSEITSEAVFNRLREK-KPKFEEKLVPVEGDIAELDLGLTDHDRTIIC 523
            +R +   + ++ F ++ + +VF +  E  + + + +LV  E    +L        RTI C
Sbjct: 881  LRARATNDFEKDFFKLMNNSVFGKTMENIRNRVDIQLVTNEKQAKKLISKPNYQHRTIFC 940

Query: 524  EQVNVIFHVAATTRFDEPLKVATAV 598
            E + VI        FD+P+ +  ++
Sbjct: 941  ENLVVIHMKKTRLVFDKPVYLGMSI 965


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,648,513
Number of Sequences: 59808
Number of extensions: 567134
Number of successful extensions: 1571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2491217872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)