Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_C01
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 616 SSPAKVDRRRHLQRLIKPSRRSHVEYHIYLLAYYRSVVVRQPQVQFSDITFH 461
           +SP      + L+  + P R S +EY +Y  A  +S    QP  Q+   + H
Sbjct: 401 TSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQS----QPSPQYPSTSSH 448


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 23/98 (23%), Positives = 43/98 (43%)
 Frame = +2

Query: 308  LLRSCDINKIYILIRRKKGKNVKERFSEITSEAVFNRLREKKPKFEEKLVPVEGDIAELD 487
            +++  ++NK       K+    KER +  T++ V +  +E+K K EEK +       E  
Sbjct: 771  VIKPANVNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQK-KSEEKNINDHCVTTEQS 829

Query: 488  LGLTDHDRTIICEQVNVIFHVAATTRFDEPLKVATAVN 601
            + +T+   TI     +VI     T         +T++N
Sbjct: 830  VVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSIN 867


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 740 TWTPEAMLAIAEKLXAEQLDAITPSIIKGWPNTYTFEKA 856
           +WT E M A  E L    +     S   G P+T  +++A
Sbjct: 410 SWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRA 448


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 497 TDHDRTIICEQVNVIFHVAATT 562
           T+HDR+++ + + V+  +  TT
Sbjct: 482 TEHDRSVMIQAIRVVQKLVNTT 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,157
Number of Sequences: 438
Number of extensions: 5732
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)