Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B24
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 30 0.23
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.2
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 27 2.8
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 2.8
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 27 2.8
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 26 3.8
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 26 5.0
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 6.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 6.6
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 30.3 bits (65), Expect = 0.23
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 168 INEEEPDNGLSMNVTWKNICKWNTEYSAD----SVEWCPVEPHKNVLVCGTYELAESDED 335
+N ++PD GL + + KWN E + + +V W E + +VC L D+D
Sbjct: 118 VNCDDPD-GLLLR--FLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNADHL---DKD 171
Query: 336 QLAQKQTRLGKIFLF 380
+Q R+GK F+F
Sbjct: 172 DDFVRQLRIGKCFIF 186
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 552 LKLWREHVIGQDILXLSLDWS 614
LK+W+ HV Q L L L W+
Sbjct: 168 LKIWQNHVNSQTALPLELTWT 188
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 413 NTNCKYIRDLGLEVVQSQIG 472
+T+CK+IR G E+VQ IG
Sbjct: 202 HTDCKFIRVSGSELVQKYIG 221
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 20 GDLWSCLLFTAKSLNNLFLLLQEINLFNYDLSAFQSIV 133
G+L+S F A+ L NLF+L + + L F S++
Sbjct: 302 GELFSVSPFMARRLGNLFILNERVALMGRYKYGFMSMI 339
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 20 GDLWSCLLFTAKSLNNLFLLLQEINLFNYDLSAFQSIV 133
G+L+S F A+ L+NLF+L + + L F S++
Sbjct: 388 GELFSVSPFLARRLHNLFVLNERVALLGRYEHGFMSMI 425
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 268 HHSTESALYSVFHLQIFFHVTFILNPLSGSSSLIRLVDIETERTRY 131
HH E +L + F + FI+ +S S+S + TE RY
Sbjct: 4 HHMMERSLTFERNYSHLFIIIFIIRDMSSSNSRVHEEQPPTENRRY 49
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/70 (24%), Positives = 29/70 (41%)
Frame = +3
Query: 231 WNTEYSADSVEWCPVEPHKNVLVCGTYELAESDEDQLAQKQTRLGKIFLFVINQDATEIK 410
W T + A S+ CP P + + L ++ QL Q+Q++ + L N +
Sbjct: 310 WPT-FRATSIGRCPFVPETKYRLSTSKSLVAKNDQQLLQRQSQEPSLILRA-NSMKASLP 367
Query: 411 PIQTVNTSGI 440
I SG+
Sbjct: 368 DISNTGISGM 377
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 318 LAHKFHIRARSCEVPRDTTQLNLHCTQCSTCKYFSTSRSYLIRCL 184
L H +H A S E+P N T+C + S SY++ L
Sbjct: 398 LLHGYHFMASSTELPWLRVTCNAIVTKCLDSQLPSVRLSYILDTL 442
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 174 EEEPDNGLSMNVTWKNICKWNTEYSADSVEWCPVEPHKNVLVCGTYELAESDE 332
E P+N LS ++T +N +WN + + + CGT + +SDE
Sbjct: 676 EITPENELSSSLTHQNTGEWNAFIFVKYFD----RKSQEISGCGTLHVNKSDE 724
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,561
Number of Sequences: 5004
Number of extensions: 53002
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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