Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B24
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0454 + 25348189-25348516,25349154-25349869 57 1e-08
02_02_0376 + 9551050-9551525,9551966-9552278 30 1.3
01_01_0946 - 7442907-7443284,7443797-7445122 29 2.9
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 28 5.1
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253... 28 5.1
02_05_0464 - 29256887-29257765,29258455-29258538 28 5.1
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594... 28 6.8
02_02_0386 - 9599403-9599715,9599830-9600359 28 6.8
02_02_0380 + 9568775-9569250,9569360-9569672 28 6.8
08_02_0648 - 19694538-19696569,19697151-19697998 27 8.9
02_02_0381 + 9573651-9574174,9574271-9574583 27 8.9
01_01_1039 - 8200922-8201553,8201652-8201784 27 8.9
>04_04_0454 + 25348189-25348516,25349154-25349869
Length = 347
Score = 56.8 bits (131), Expect = 1e-08
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Frame = +3
Query: 246 SADSVEWCPVEPHKNVLVCGTYELAESDEDQLAQKQTRLGKIFLFVIN---QDA-TEIKP 413
+AD+VE+CP P ++VL TY L ++Q ++Q R G + LF ++ +DA ++
Sbjct: 11 NADAVEFCPHRPFRHVLAAATYTL----QEQGGERQDRAGSVSLFAVDAGEEDAPRRLRL 66
Query: 414 IQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIYRLFNDETLNLKLWREHVIGQDI- 590
+ TV T+G+ D+KW +LA + G L ++RL ++ + V DI
Sbjct: 67 LHTVETAGVFDMKWS----PVAPLLAQADAHGRLALWRLEQEDGSDKGAVLRDVCSGDIS 122
Query: 591 --LXLSLDWS 614
+ L +DW+
Sbjct: 123 SSMCLFVDWN 132
>02_02_0376 + 9551050-9551525,9551966-9552278
Length = 262
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 192 GLSMNVTWKNICKWNTEYSADSVEWC-PVEPH 284
G+S+ +T N C N + +DS WC P PH
Sbjct: 103 GVSVTITATNFCPPNWDLPSDSGGWCNPPRPH 134
>01_01_0946 - 7442907-7443284,7443797-7445122
Length = 567
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 342 AQKQTRLGKIFLFVINQDATE-----IKPIQTVNTSGILDLKWCNHKLEGHAVLAAVTSI 506
A+K+ ++G + +FV N + E P+Q V+ +LD++ N G +L
Sbjct: 366 AEKEPKIGSLQMFVKNSGSCEEFGPRAFPVQEVHKIAVLDMRLANTDRHGGNILIRKDEN 425
Query: 507 GELRI 521
G++ +
Sbjct: 426 GQIEL 430
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -1
Query: 268 HHSTESALYSVFHLQIFFHVTFILNPLSGSSSLIRLVDIETERTRYYTLECRQVVI 101
HH E VF Q+ + F+L +S ++S +RL + + T+ +V++
Sbjct: 657 HHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLV 712
>06_03_0598 +
22621765-22624795,22624903-22625066,22625290-22625328,
22625479-22625487
Length = 1080
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -2
Query: 117 ADRS*LNKLISCNKRNKLLSDFAVNNKQLHKSPHSIG 7
AD S ++ L +C+K KLL D N K PHSIG
Sbjct: 451 ADWSFISSLSNCSKLTKLLID---GNNLKGKLPHSIG 484
>02_05_0464 - 29256887-29257765,29258455-29258538
Length = 320
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 393 DATEIKPIQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIY 524
DA E+KP+ +L L+WC A ++++S+G L ++
Sbjct: 263 DAVEVKPVAAER---LLSLEWCGEASRTAAPESSISSLGGLGLW 303
>04_04_0014 +
22158441-22158669,22158782-22158878,22159264-22159461,
22159907-22160141,22160383-22160710,22160798-22161068,
22161169-22161424,22161508-22161964,22162096-22162286
Length = 753
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -1
Query: 217 FHVTFILNPLSGSSSLIRLVDIETER-TRYY 128
F + F+ P+S S L+RL+DI E TRY+
Sbjct: 192 FCMAFLFLPVSRGSVLLRLIDIPFEHATRYH 222
>02_02_0386 - 9599403-9599715,9599830-9600359
Length = 280
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 192 GLSMNVTWKNICKWNTEYSADSVEWC-PVEPH 284
G+++ +T N C N + +D+ WC P PH
Sbjct: 121 GVTVTITATNFCPPNWDLPSDNGGWCNPPRPH 152
>02_02_0380 + 9568775-9569250,9569360-9569672
Length = 262
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 192 GLSMNVTWKNICKWNTEYSADSVEWC-PVEPH 284
G+++ +T N C N + +D+ WC P PH
Sbjct: 103 GVTVTITATNFCPPNWDLPSDNGGWCNPPRPH 134
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 393 DATEIKPIQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELR 518
D +I + ++ +LDL+ CNH E + + + S+ +LR
Sbjct: 571 DCKQIPMLSSLQILRVLDLEGCNHLNEDNVRIEDIGSLHQLR 612
>02_02_0381 + 9573651-9574174,9574271-9574583
Length = 278
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 192 GLSMNVTWKNICKWNTEYSADSVEWC-PVEPH 284
G+++ VT N C N +D+ WC P PH
Sbjct: 119 GVTVTVTATNFCPPNWNLPSDNGGWCNPPRPH 150
>01_01_1039 - 8200922-8201553,8201652-8201784
Length = 254
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 189 NGLSMNVTWKNICKWNTEYSADSVEWC 269
NG S+ VT N C N S D+ WC
Sbjct: 94 NGTSVTVTATNYCPPNYSESGDAGGWC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,983
Number of Sequences: 37544
Number of extensions: 310531
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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