Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B24
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   31   0.74 
SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)            28   6.9  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)                   28   6.9  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         27   9.1  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 323 KRRRSIGAETNKTRKNISIRNQSGRDRNKTNTN 421
           +RRR+I ++ N +R N   RN +   RN  N N
Sbjct: 15  QRRRNIDSDNNSSRNNDKNRNNNSSSRNNDNNN 47


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = -3

Query: 302 TYEHVLVRFHGTPLN*ICTVLSVPLANIFPRHVHT*SVVWFFLVNSTCRYRNRANTLLYF 123
           T EH+    + TP N      S+  A   PR  H  S+       +T RY   +NTLLYF
Sbjct: 740 TLEHLTTLRYSTPSN-----TSLHFAIPHPRTPHYTSLFHTLEHLTTLRYSTPSNTLLYF 794

Query: 122 GMPTGR 105
            +P  R
Sbjct: 795 AIPHPR 800



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -3

Query: 302 TYEHVLVRFHGTPLN*ICTVLSVPLANIFPRHVHT*SVVWFFLVNSTCRYRNRANTLLYF 123
           T EH+    + TP N   T+L   + +  PR  H  S+       +T RY   +NT L+F
Sbjct: 775 TLEHLTTLRYSTPSN---TLLYFAIPH--PRTPHYTSLFRTLKYLTTLRYSTPSNTSLHF 829

Query: 122 GMPTGR 105
            +P  R
Sbjct: 830 AIPHPR 835


>SB_2073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 26  LWSCLLFTAKSLNNLFLLLQEINLFNYDLSAFQSIVTCSLC 148
           ++S +  T   L   F L+Q+I   N+D+S F     C LC
Sbjct: 62  IFSWIFVTIIFLFYFFCLVQKIPQINWDMSVFGYFSDCGLC 102


>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
          Length = 519

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 275 GTSQERARMWNL*ASGKRRRSIGAETNKTRKNI-SIRNQSGRDRNKTNTNCKYIRDLGLE 451
           G  Q+    +NL +SGKR+ +  ++  +  K+I S++N++   R  T+   + I++  +E
Sbjct: 82  GDKQDEQEFYNLFSSGKRKSTGSSQLLRGGKSILSLQNRNCTRRASTSLGIRGIKEEEIE 141


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 174  EEEPDNGLSMNVTWKNICKWNTEYSADSVEWCPVEPHKNVLVCGTYELAESDE 332
            E EPD     ++    IC W          +C VEP +  L     ELA ++E
Sbjct: 3455 EFEPDFIKGKSLAAGGICAWVINIVQFYYIFCDVEPKRKALEAANAELAAAEE 3507


>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 1195

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 8   PMECGDLWSCLLFTAKSLNNLFLLLQEINLFNYDLSAFQSIVTCSLCF 151
           P + G LWS L      L+ L  L   ++  ++ LSA    + CS+ F
Sbjct: 625 PDKEGTLWSVLRVVYSLLSTLAHLALSLSFLSFFLSALSFCINCSIEF 672


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 348 SAPIDLRRFPLAHKFHIRARSCEVPRDTTQLNLHCTQCSTCKYFSTSRSYLI 193
           S P D +R P     H      ++ +D  Q   H TQ ST ++  TS+ Y+I
Sbjct: 482 SQPTDTQRHPSGMSSHSTLNQ-QILKDI-QAVCHATQLSTNRHSKTSKRYVI 531


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 204 NVTWKNICKWNTEYSADSVEWCPV 275
           NVT  ++ +W+ EY  +  + CPV
Sbjct: 456 NVTTSDVAEWSMEYIVEQQDSCPV 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,088,054
Number of Sequences: 59808
Number of extensions: 395345
Number of successful extensions: 986
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)