Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B24
(616 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC017335-1|AAH17335.1| 452|Homo sapiens WD repeat domain 85 pro... 93 9e-19
BC003123-1|AAH03123.2| 452|Homo sapiens WD repeat domain 85 pro... 93 9e-19
AL365502-9|CAI14584.1| 452|Homo sapiens WD repeat domain 85 pro... 93 9e-19
AK075115-1|BAC11411.1| 452|Homo sapiens protein ( Homo sapiens ... 93 9e-19
X60010-1|CAA42625.1| 245|Homo sapiens p53 transformation suppr... 30 7.5
BC104817-1|AAI04818.1| 796|Homo sapiens protocadherin beta 3 pr... 29 9.9
AF217755-1|AAK51622.1| 796|Homo sapiens protocadherin-beta3 pro... 29 9.9
AF152496-1|AAD43757.1| 796|Homo sapiens protocadherin beta 3 pr... 29 9.9
>BC017335-1|AAH17335.1| 452|Homo sapiens WD repeat domain 85
protein.
Length = 452
Score = 92.7 bits (220), Expect = 9e-19
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 14/141 (9%)
Frame = +3
Query: 234 NTEYSADSVEWCPVEPHKNVLVCGTYELAESDED----------QLAQKQTRLGKIFLFV 383
+TE +ADSVEWCP++ +++L CGTY+L ++ ++ + Q RLG++FL+
Sbjct: 11 DTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQVRLGRLFLYS 70
Query: 384 INQDATEIKP---IQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIYRLFNDETLN- 551
N D I P +Q +TS ILD+KWC+ + GHA+L + G +++ RL E +
Sbjct: 71 FN-DNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLRLVESEKSHV 129
Query: 552 LKLWREHVIGQDILXLSLDWS 614
L+ + + L LSLDWS
Sbjct: 130 LEPLSSLALEEQCLALSLDWS 150
>BC003123-1|AAH03123.2| 452|Homo sapiens WD repeat domain 85
protein.
Length = 452
Score = 92.7 bits (220), Expect = 9e-19
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 14/141 (9%)
Frame = +3
Query: 234 NTEYSADSVEWCPVEPHKNVLVCGTYELAESDED----------QLAQKQTRLGKIFLFV 383
+TE +ADSVEWCP++ +++L CGTY+L ++ ++ + Q RLG++FL+
Sbjct: 11 DTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQVRLGRLFLYS 70
Query: 384 INQDATEIKP---IQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIYRLFNDETLN- 551
N D I P +Q +TS ILD+KWC+ + GHA+L + G +++ RL E +
Sbjct: 71 FN-DNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLRLVESEKSHV 129
Query: 552 LKLWREHVIGQDILXLSLDWS 614
L+ + + L LSLDWS
Sbjct: 130 LEPLSSLALEEQCLALSLDWS 150
>AL365502-9|CAI14584.1| 452|Homo sapiens WD repeat domain 85
protein.
Length = 452
Score = 92.7 bits (220), Expect = 9e-19
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 14/141 (9%)
Frame = +3
Query: 234 NTEYSADSVEWCPVEPHKNVLVCGTYELAESDED----------QLAQKQTRLGKIFLFV 383
+TE +ADSVEWCP++ +++L CGTY+L ++ ++ + Q RLG++FL+
Sbjct: 11 DTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQVRLGRLFLYS 70
Query: 384 INQDATEIKP---IQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIYRLFNDETLN- 551
N D I P +Q +TS ILD+KWC+ + GHA+L + G +++ RL E +
Sbjct: 71 FN-DNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLRLVESEKSHV 129
Query: 552 LKLWREHVIGQDILXLSLDWS 614
L+ + + L LSLDWS
Sbjct: 130 LEPLSSLALEEQCLALSLDWS 150
>AK075115-1|BAC11411.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ90634 fis, clone PLACE1003598, weakly similar to
TRP-ASP REPEATS CONTAINING PROTEIN RBA-1. ).
Length = 452
Score = 92.7 bits (220), Expect = 9e-19
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 14/141 (9%)
Frame = +3
Query: 234 NTEYSADSVEWCPVEPHKNVLVCGTYELAESDED----------QLAQKQTRLGKIFLFV 383
+TE +ADSVEWCP++ +++L CGTY+L ++ ++ + Q RLG++FL+
Sbjct: 11 DTELTADSVEWCPLQGCRHLLACGTYQLRRPEDRPAGPQNKGGMEVKEPQVRLGRLFLYS 70
Query: 384 INQDATEIKP---IQTVNTSGILDLKWCNHKLEGHAVLAAVTSIGELRIYRLFNDETLN- 551
N D I P +Q +TS ILD+KWC+ + GHA+L + G +++ RL E +
Sbjct: 71 FN-DNNSIHPLVEVQRKDTSAILDMKWCHIPVAGHALLGLADASGSIQLLRLVESEKSHV 129
Query: 552 LKLWREHVIGQDILXLSLDWS 614
L+ + + L LSLDWS
Sbjct: 130 LEPLSSLALEEQCLALSLDWS 150
>X60010-1|CAA42625.1| 245|Homo sapiens p53 transformation
suppressor protein.
Length = 245
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 195 LSMNVTWKNICKWN---TEYSADSVEWCPV 275
LS+ WK IC W+ TE D V WCP+
Sbjct: 191 LSILSEWKEICVWSIWMTETLFDIVWWCPM 220
>BC104817-1|AAI04818.1| 796|Homo sapiens protocadherin beta 3
protein.
Length = 796
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 274 TGHHSTESALYSVFHLQIFFHVTFILNPLSGSSSLIRLVDIETERTRYYTLECR 113
TG T S Y+ FH TF LNP++G L++ ++ E + +E +
Sbjct: 271 TGSFGTIS--YAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAK 322
>AF217755-1|AAK51622.1| 796|Homo sapiens protocadherin-beta3
protein.
Length = 796
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 274 TGHHSTESALYSVFHLQIFFHVTFILNPLSGSSSLIRLVDIETERTRYYTLECR 113
TG T S Y+ FH TF LNP++G L++ ++ E + +E +
Sbjct: 271 TGSFGTIS--YAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAK 322
>AF152496-1|AAD43757.1| 796|Homo sapiens protocadherin beta 3
protein.
Length = 796
Score = 29.5 bits (63), Expect = 9.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 274 TGHHSTESALYSVFHLQIFFHVTFILNPLSGSSSLIRLVDIETERTRYYTLECR 113
TG T S Y+ FH TF LNP++G L++ ++ E + +E +
Sbjct: 271 TGSFGTIS--YAFFHASEEIRKTFQLNPITGDMQLVKYLNFEAINSYEVDIEAK 322
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,870,893
Number of Sequences: 237096
Number of extensions: 1779449
Number of successful extensions: 3368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3359
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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