Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B24
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.6  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 144 SEHVTILWNADRS*LNKLISCNKRNKLLSDFAVNN 40
           SE V  L N  +  + +  SC K +KLL  F  NN
Sbjct: 93  SEQVNRLVNNCKD-ITESNSCKKSSKLLQCFIDNN 126


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 288 NVLVCGTYELAESDE 332
           N  VCG Y LAE D+
Sbjct: 88  NEEVCGIYFLAEPDQ 102


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 272 RGTSQERARMWNL*ASGKRRRSIGAETNKTRKNISIRNQSGRDRNKTNTN 421
           R TS+ER+R        +  + I + +NKT  N +    +  + N  N N
Sbjct: 293 RETSKERSRDRTERERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,506
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)