Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B21
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    29   0.75 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.3  
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   9.3  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +1

Query: 523  TIPSWMCIFCSVGNFITCPYGASSFSLFWGFIILLSIYWWY---RFEIYSSGGYISFSNV 693
            +I  W+ ++   GN +      SSFS  WG+ ILL IY+     R   ++ GG  +  N+
Sbjct: 878  SIHFWIALWS--GNSLFSLKLPSSFSFLWGYAILLFIYFLMDLSRAITFAKGGRTASENI 935


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +2

Query: 155 KEEDIPGEEGNLLEQPKEDTIAPRNPFMKVRTYVLALRPWSLSASLLPTLLGAALSYRL- 331
           ++ DIP    +    P   +I       K    V A+R WSL  +++  LL   + +   
Sbjct: 43  EQNDIPSVTSSGSSTPSSISIEKEIKISKGNVIVKAIRSWSLYVAIIAILLLLVILHSFQ 102

Query: 332 --PGDNG 346
             P DNG
Sbjct: 103 GRPQDNG 109


>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 134 KKMEQKRKEEDIPGEEGNLLEQPKEDTIA 220
           K+MEQKRK ++I   E  L  + +E   A
Sbjct: 37  KRMEQKRKLDEIKEREKELKREKEEQRAA 65


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 541 CIFCSVGNFITCPYGASSFSLFWGFIILLSIYW 639
           C+ C++ +  +  Y + + S F+G   +L++ W
Sbjct: 188 CMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMW 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,639
Number of Sequences: 5004
Number of extensions: 66783
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)