Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B21
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0768 + 6975005-6975490 31 1.4
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 30 1.8
03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354... 30 2.4
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 29 5.5
04_03_0536 - 16875813-16876087,16877023-16877091,16877134-168772... 29 5.5
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 29 5.5
03_02_0715 + 10621789-10623243,10624074-10625018 28 7.3
01_01_0082 + 625198-625719 28 7.3
05_04_0123 + 18210069-18213737 28 9.6
>12_01_0768 + 6975005-6975490
Length = 161
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 389 PVHGAGNVVNTYFDFVKGIDN--RKSDDRTLVDHILSIDEVV 508
P G G V + F+F I N ++ DD L+D I+ ID+ V
Sbjct: 4 PKRGIGMVADVIFEFDMRIKNGEKEEDDLQLIDEIIEIDDNV 45
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 562 NFITCPYGASSFSLFW---GFIILLSIYWWYRFEIYSSGGYISFSNVW 696
NF + P A+ SLF G ++LL + +W + +++++ Y+SF V+
Sbjct: 572 NFPSLPAPAAFASLFHAGIGAVLLLYVLFWIKLDLFTTLKYLSFLGVF 619
>03_03_0022 -
13834090-13834128,13835217-13835282,13835364-13835461,
13836340-13836493,13836742-13836798,13836906-13837028
Length = 178
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 110 LYLITICFKKMEQKRKEEDIPGEEGNLLEQPKEDTIAPRNPFMKVRTYVLALRPWSLSA- 286
L+ I I F + Q G+ + P+ DT+AP+ F+ + + L W L+
Sbjct: 89 LFSIGITFSALWQPISALRSVGKVFEPFKDPRVDTLAPKLVFIALNLAAMGLGVWKLNTL 148
Query: 287 SLLPT 301
LLPT
Sbjct: 149 GLLPT 153
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +2
Query: 401 AGNVVNTYFDFVKGIDNRKSDDRTLVDHILSIDEVV 508
AG ++T F F+ GI++R+S+ TL +L+I++V+
Sbjct: 16 AGESLSTEFSFIGGIEHRRSELYTL---LLAINQVI 48
>04_03_0536 -
16875813-16876087,16877023-16877091,16877134-16877292,
16877307-16877636,16878764-16879030,16880033-16880077,
16880159-16880261
Length = 415
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -3
Query: 692 TLLKLIYPPELYISNLYHQYIERRMINPQNKLKLDAPYGQVMKLPTEQKMHIQLGIV 522
+L+ +Y E IS++ + ER ++ P N + + + +LPTEQ + I+
Sbjct: 338 SLVSFVYN-ESSISDMVAYFCERAILAPTNDIAAEINSHMISQLPTEQMSYYSSDII 393
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -2
Query: 534 ARYSIAPRDTTSSILKI*STKVLSSDLRLSIPLTKSKYVLTTLPAP*TGSIVHNVSKRVH 355
+ Y P T++++KI +++ + R L K V T G ++HN S H
Sbjct: 124 SEYDDLPSKETAAVIKIAPSRMATQSERFGYELAKWLGVRTP-----QGRVIHNFSSEWH 178
Query: 354 QLKPLSPGSR 325
Q+K +R
Sbjct: 179 QMKDAVENAR 188
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 161 EDIPGEEGNLLEQPKEDTIAPRNPFMKVR 247
ED+ EE +L E+ +ED APR+ MK R
Sbjct: 125 EDLEEEEEDLEEEEEEDDEAPRSKRMKKR 153
>01_01_0082 + 625198-625719
Length = 173
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 711 TTDTGPNVTKTNISPRAIYFKPIPPVYRKEDDKPP 607
TT T + ++ P +Y+ P PPVY PP
Sbjct: 46 TTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPP 80
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 401 AGNVVNTYFDFVKGIDNRKSDDRTLVDHILSIDEVVS 511
AG + T F F+ GI+ R+S+ TL +L++++V++
Sbjct: 16 AGESLGTEFSFIGGIERRRSELYTL---LLAVNQVIN 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,401,413
Number of Sequences: 37544
Number of extensions: 430948
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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