Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B21
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical...    30   1.6  
AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical ...    29   2.8  
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    29   3.7  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical
           protein Y45F10D.13a protein.
          Length = 473

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/90 (24%), Positives = 33/90 (36%)
 Frame = -3

Query: 740 LVPXGPXKQILQTLDQTLLKLIYPPELYISNLYHQYIERRMINPQNKLKLDAPYGQVMKL 561
           +VP  P    ++  DQ   ++  P E  I      Y ++  + P NK++ D P G    L
Sbjct: 281 IVPNRPKTPKIE--DQVYNQVYKPNETVIMQSNQGYYDKAAVVPNNKVRFDLPSGSDSNL 338

Query: 560 PTEQKMHIQLGIVLHQGIPLHQYSKYDLLK 471
                 H       H      Q S Y + K
Sbjct: 339 QMSLNPHQNQFPPTHTQTSTQQPSNYGMKK 368


>AL032647-5|CAA21693.1|  370|Caenorhabditis elegans Hypothetical
           protein Y57A10B.6 protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 605 NKLKLDAPY-GQVMKLPTEQKMHIQLGIVLHQGIPLHQYSKYDLLKFCHRTC 453
           N+++++  +  Q +K   E+ +   +  V    +PL  Y KYD+   CH  C
Sbjct: 199 NRMEIEMIFLAQCIKAGNEEMISTAIEFVGTDELPLEFYRKYDIALSCHLYC 250


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 568 ITCPYGASSFSL----FWGFIILLSIYWWYRFEIYSSG 669
           +TCP   S FSL     W FI+L++ + W+    + +G
Sbjct: 75  VTCPSKLSRFSLKFVPIWTFIVLINSFAWFSICYFVNG 112


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 407 NVVNTYFDFVKGIDNRKSDDRTLVDHILSIDEVVSLGAILYL 532
           N + TYFD + G+D++  +     D++ +I   + +  IL++
Sbjct: 774 NDLETYFDTIFGLDHKHEEAEVQTDYLPAIGLCIGIFIILFI 815


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,609,305
Number of Sequences: 27780
Number of extensions: 381296
Number of successful extensions: 1107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)