Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B21
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.20 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.20 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.20 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 605 NKLKLDAPYGQVMKLPTEQKMHI----QLGIVLHQGIPLHQYSKYDLLKFCHRTCG 450
           NKL  +A Y  + ++ T+++ H     +   V+H+ +P++       LK CH   G
Sbjct: 97  NKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVG 152


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 605 NKLKLDAPYGQVMKLPTEQKMHI----QLGIVLHQGIPLHQYSKYDLLKFCHRTCG 450
           NKL  +A Y  + ++ T+++ H     +   V+H+ +P++       LK CH   G
Sbjct: 97  NKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVG 152


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 605 NKLKLDAPYGQVMKLPTEQKMHI----QLGIVLHQGIPLHQYSKYDLLKFCHRTCG 450
           NKL  +A Y  + ++ T+++ H     +   V+H+ +P++       LK CH   G
Sbjct: 97  NKLASNAGYNVIEQVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVG 152


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 164 DIPGEEGNLLEQPKEDTIAPRNPFMKVRT 250
           D+PG+      + K DTI P +  +  RT
Sbjct: 138 DLPGKSTTTTAEVKRDTINPEDVILIRRT 166


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +2

Query: 455 KSDDRTLVDHILSIDEVVSLGAILYLAGCA--FFVPLVISSPARMEHLALVYFGGLSSSF 628
           K D       +LS+  V  L  IL     A    V + I +   +  +  ++   L+ + 
Sbjct: 12  KEDQPENTFSLLSVLLVGFLFLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIAD 71

Query: 629 LYTGGIGLKYIALGDILVLVTFGP 700
           L+ G + + +  + D+L    FGP
Sbjct: 72  LFVGCLVMTFAGVNDLLGYWVFGP 95


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 164 DIPGEEGNLLEQPKEDTIAPRNPFMKVRT 250
           D+PG+      + K DTI P +  +  RT
Sbjct: 138 DLPGKSTTTTVEVKRDTINPEDVILIRRT 166


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 GAILYLAGCAFFVPLVISSPARME 586
           G ++Y +  +FF+PL++ S   +E
Sbjct: 195 GYVIYSSLGSFFIPLLLMSLVYLE 218


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 GAILYLAGCAFFVPLVISSPARME 586
           G ++Y +  +FF+PL++ S   +E
Sbjct: 195 GYVIYSSLGSFFIPLLLMSLVYLE 218


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 515 GAILYLAGCAFFVPLVISSPARME 586
           G ++Y +  +FF+PL++ S   +E
Sbjct: 195 GYVIYSSLGSFFIPLLLMSLVYLE 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,143
Number of Sequences: 438
Number of extensions: 5144
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)