Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B17
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    96   6e-21
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    29   0.81 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.4  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    27   4.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    26   7.6  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    26   7.6  

>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%)
 Frame = +1

Query: 271 KHFLQLTNPLNVLASDAELDEAQRIVAEFRKTRRMPPGYDEEKLWSTKYLYDSAFHPDTG 450
           +H + +T+P  +L++  +L+ A + + ++   +       +E +W  K + DS  HPDT 
Sbjct: 24  QHAMDITDPRTLLSTSQDLNSAVKTLEDYGAGKIAQL---DETVWHAKKIVDSTLHPDTK 80

Query: 451 EKMFVLGRMAAQAPMNTIITGCMITFYKTTPATVFWQWVNQTFNAVVNYTNRSGDAPIST 630
           E +F+  RM+     N ++T  M+     T  TVFWQW+NQ+ N   N  N +    ++ 
Sbjct: 81  EPVFLPFRMSCFVLTNLVVTAGMLQPNLGTAGTVFWQWMNQSVNVAFNSANANKSTQLTL 140

Query: 631 SRLLASXXXXXXXXXXXXXXXNSKVKNM-------KPIYARLVPFAAVCGANFINIPMMR 789
            ++  S               N  V  M       K +  RL PFAAV  A  +N+ +MR
Sbjct: 141 PQMTKSYIYAVSASCGVAIGLNKIVPRMNFLSSSSKAVLGRLTPFAAVASAGVLNVFLMR 200

Query: 790 SNEIXNGTPVFTADG 834
             E+  G  VF  +G
Sbjct: 201 GEELRQGIDVFDKEG 215


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 462 RARTHGGTGSHEHYHYGMYDNILQDNAGH 548
           R+R   G GS E Y+Y  YD +   NA +
Sbjct: 137 RSRRSAGMGSWEEYYYNSYDYMNDQNASN 165


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 381 GRHTTCFSEFSNDPLCLVEFRIRSQHVERIGQLQEVLGSTRIR 253
           G    CF    N P+C VEF      +E +  LQ V  S+ I+
Sbjct: 451 GYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIK 493


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 285 LQEVLGSTRIRALIVSRFVQIYLWAAHGSLVPFC 184
           LQEVLG+  IR ++  R + +Y W +  +  P C
Sbjct: 16  LQEVLGAKMIREILNERDISLY-WGSAPTGRPHC 48


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -1

Query: 774 IDEISSADGREWNQTGVDWFHVLNFAIKIQSCTEXXXXXXXXXSQ*T*CTYRCIS*SIRV 595
           ++E+ + D  +WNQT +     L+ +++   C E            T C++ CI   +R 
Sbjct: 1   MNELDATDPSDWNQTKIPSLKGLDSSLRCLICHEYFRAPLITSCSHTFCSF-CIRDYLR- 58

Query: 594 VHDSVEGLIHPLPENRGRR 538
            H        P  E+R R+
Sbjct: 59  EHPMCPACRAPEQESRLRK 77


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = -2

Query: 452 SPVSGWKALSYKYLVLHSFSSSYPGGIRRVFLNSATILC 336
           +P    K ++Y + +L       PGG R + +     LC
Sbjct: 90  APTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELC 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,969
Number of Sequences: 5004
Number of extensions: 77446
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)