Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B17
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851     32   0.65 
02_02_0556 - 11444512-11445577,11445730-11446007                       30   2.6  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    29   3.5  
08_02_1351 + 26318023-26318665,26319386-26319543,26320843-263209...    29   3.5  
04_04_0257 - 23980224-23980410,23980570-23980862                       29   4.6  
02_05_0878 + 32437136-32437522                                         28   8.0  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    28   8.0  

>04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851
          Length = 105

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 279 EVLGSTRIRALIVSRFVQIYLWAAHGSLVPFCL 181
           ++ G  R+R L +S+F Q+++W   GSL   CL
Sbjct: 24  DLRGLCRLRPLEISQFFQVHVWQKDGSLGECCL 56


>02_02_0556 - 11444512-11445577,11445730-11446007
          Length = 447

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 383 PGGIRRVFL-NSATILCASSSSASEANTLRGLVSCRKCLALPEYVL*SYRGLSRSIC 216
           P GIR  FL N    L   S   SE  T R L    K  A+  Y L   RG++ ++C
Sbjct: 264 PQGIRYAFLHNDREALVIISDKLSEDETRRLLTMLEKHRAVLGYSLQDLRGINPALC 320


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 220 IDLDKPRYDQSTYSGRAKHFLQLTNPLNVLASDAELDEAQRIVAEFRKTRRM 375
           ID+    ++   + G    +   T+ L VLA D    EA RI     K R+M
Sbjct: 843 IDIVLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKKRKM 894


>08_02_1351 +
           26318023-26318665,26319386-26319543,26320843-26320930,
           26321953-26322185
          Length = 373

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 LIEIHSECVRIFGTIFFHSIINRKVPKSHGQPTNRSGQTAIRSE 251
           + ++H+E +  FG ++ HS + + +      PT   GQ   R E
Sbjct: 261 MAKLHTELLEQFGNVWHHSRVRKYLSPEDWSPTETKGQMGNRWE 304


>04_04_0257 - 23980224-23980410,23980570-23980862
          Length = 159

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 292 NPLNVLASDAELDEAQRIVAEFRKTRRMPPGYD 390
           +P+ V+ +D EL +A  ++    K  R+P G+D
Sbjct: 23  DPIKVIVTDVELRQAPALLELLTKASRLPRGWD 55


>02_05_0878 + 32437136-32437522
          Length = 128

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 468 RTHGGTGSHEHYHY 509
           R H G GSH H+HY
Sbjct: 103 RVHAGGGSHHHHHY 116


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 529 YKTTPATVFWQWVNQTFNAVVNYTNRSGDAP 621
           YK  P  +F +W N    AV+N   ++G  P
Sbjct: 394 YKELPPIMFGEWFNADTEAVINQALQTGAGP 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,612,511
Number of Sequences: 37544
Number of extensions: 520741
Number of successful extensions: 1550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)