Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B17
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   2.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   2.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 477 GGTGSHEHYHYGMYDNILQDNAGHGFLAMGESDL 578
           G + S     YGMYD + +D  G+ F    +++L
Sbjct: 370 GNSDSINTKFYGMYDILARDILGYNFDFQNKNNL 403


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 477 GGTGSHEHYHYGMYDNILQDNAGHGFLAMGESDL 578
           G + S     YGMYD + +D  G+ F    +++L
Sbjct: 370 GSSDSINTKFYGMYDILARDILGYNFDFQNKNNL 403


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 559 QWVNQTFNAVVNY 597
           QW N+TF AV+ Y
Sbjct: 76  QWHNKTFLAVIRY 88


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 559 QWVNQTFNAVVNY 597
           QW N+TF AV+ Y
Sbjct: 75  QWHNKTFLAVIRY 87


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 296 LSTCWLRMRNSTRHRGSLLNSEKHVVCRPD 385
           L+  WL  R++ R   + +N   H++C  D
Sbjct: 271 LTVLWLDSRSTERMIAASVNLICHILCMSD 300


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 520 ITFYKTTPATVFWQWVNQTFNAVVNYTN 603
           I F+  T   V W     TFNA   YT+
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTYTH 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,202
Number of Sequences: 438
Number of extensions: 5716
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)