Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B16
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...   117   2e-27
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    39   0.001
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    38   0.002
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    31   0.14 
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    28   1.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.3  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.3  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    27   2.3  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   4.1  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    27   4.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   5.4  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    26   7.1  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    26   7.1  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    26   7.1  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    25   9.4  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
            Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score =  117 bits (282), Expect = 2e-27
 Identities = 66/183 (36%), Positives = 112/183 (61%), Gaps = 13/183 (7%)
 Frame = +3

Query: 3    LRRTVLQGESHSALLIGPRSSGKTTLLNSVLHQLSRETDLENDAIIIQLNGLVHSDDKLA 182
            +R+T++ GE +S +++GPR SGK+ L++ +L + ++E  +   + +++LNG   +DDKLA
Sbjct: 566  VRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQE--INEKSYVVRLNGTYQTDDKLA 623

Query: 183  LKAITAQM--QLENTVGERVFGT---FAENLSFLLSCIQTGVD--------RRCRSMVFI 323
            L+ I+ Q+  +LE+   +    +   F++ L+ LL+ +   VD            +++F+
Sbjct: 624  LREISRQLSIELESIESDEALKSEMNFSDTLTKLLATLSHPVDLGIAEDVMTTSAAVIFV 683

Query: 324  LDQCDMFCHSGISQTLLYNLFDVTHSQTAPMCVIGVTNRLDIMELFEKRVKSRFSHRHIF 503
            L++ D+F      Q LLYNLFD+  S+ AP+ +IG+T R D  E  EKRVKSRFSH  I 
Sbjct: 684  LEEFDLFVQHS-RQMLLYNLFDIAQSRKAPILIIGLTTRYDCSESLEKRVKSRFSHMVIP 742

Query: 504  IFP 512
            + P
Sbjct: 743  MRP 745


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 4/162 (2%)
 Frame = +3

Query: 9   RTVLQGESHSALLI-GPRSSGKTTLLNSVLHQLSRETDLENDAIIIQLNGLVHSDDKLAL 185
           R  L   +  AL + G   +GKT LL++VL  +  +    N   +  +N +  ++ K   
Sbjct: 184 RQHLDANAGGALYVSGAPGTGKTVLLHNVLDHVVSDYPKVN---VCYINCMTINEPKAIF 240

Query: 186 KAITAQMQLENTVGERVFGTFAENLSF---LLSCIQTGVDRRCRSMVFILDQCDMFCHSG 356
           + I +++     V E +      +++F   L S      +     ++ +LD+ D      
Sbjct: 241 EKIHSKI-----VKEEILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR- 294

Query: 357 ISQTLLYNLFDVTHSQTAPMCVIGVTNRLDIMELFEKRVKSR 482
             Q +LY LF+     T+ + ++G+ N LD+ + F  R++++
Sbjct: 295 -EQQVLYTLFEWPSRPTSRLILVGIANALDMTDRFLPRLRTK 335


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
 Frame = +3

Query: 12  TVLQGESHSALLI-GPRSSGKTTLLNSV---LHQLSRETDLENDAIIIQLNGLVHSDDKL 179
           + ++ E+ + L I G   +GKT  ++ V   L +LSRE  L   +   ++NG+  +    
Sbjct: 354 SAIEEETGACLYISGTPGTGKTATVHEVIWNLQELSREGQLPEFSFC-EINGMRVTSANQ 412

Query: 180 ALKAITAQMQLENTVGERVFGTFAENLSFLLSCIQTGVDRRCRSMVFILDQCDMFCHSGI 359
           A   +      E+  GERV    A +L   L    T       S V ++D+ D       
Sbjct: 413 AYSILW-----ESLTGERVTPIHAMDL---LDNRFTHASPNRSSCVVLMDELDQLVTH-- 462

Query: 360 SQTLLYNLFDVTHSQTAPMCVIGVTNRLDIME-LFEKRVKSR 482
           +Q +LYN F+      + + V+ V N +D+ E +   R+ SR
Sbjct: 463 NQKVLYNFFNWPSLPHSRLIVVAVANTMDLPERILSNRISSR 504


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 6   RRTVLQGESHSALLIGPRSSGKTTLLNSVL--HQLSRETDLENDAIIIQLNGLVHSDDKL 179
           R+ + +G   + +++GP  SGK+TL+N++   H +  +  L+  A   Q   +  +   +
Sbjct: 24  RKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQVV 83

Query: 180 ALKAITAQMQLENTVG 227
               +  Q+ L +T G
Sbjct: 84  RENRVQLQLNLIDTPG 99


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 645 TSLIFFSSSATQNPPGADSAIPQTISFSLPEAR 547
           TS   F S++T  PP +++A P T+  S+P +R
Sbjct: 227 TSSPNFLSTSTPAPPNSNNANPSTLFSSIPSSR 259


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/23 (43%), Positives = 20/23 (86%)
 Frame = +3

Query: 39  ALLIGPRSSGKTTLLNSVLHQLS 107
           +++IGP  SGK++L++++L +LS
Sbjct: 644 SIVIGPTGSGKSSLISALLGELS 666


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 45  LIGPRSSGKTTLLNSVLHQLSRET 116
           L+GP  +GKTTL+  +L ++   T
Sbjct: 625 LVGPNGAGKTTLIKLILEKVQPST 648


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 9   RTVLQGESHSALLIGPRSSGKTTLLNSVLHQLSRET 116
           R  +Q +  +  LIGP  SGKT+L   ++++  + T
Sbjct: 30  RKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTT 65


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 483 FSHRHIFIFPNEVN 524
           F H H+F+FPN  N
Sbjct: 117 FGHEHVFLFPNAFN 130


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 550 EIISYRSSSLTSLGNMNM*RWEKRDLTLFSNNSIMSKRFVTPITHI 413
           EI+  +      L N+   + ++ D+ L  NN+++ + F  PIT +
Sbjct: 238 EILDVQRDMRNDLSNLTR-KVDRMDMRLSRNNNMIMRSFAQPITEV 282


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 15   VLQGESHSALLI-GPRSSGKTTLLNSV 92
            VL GES + +++ GP  +GK+TLL  V
Sbjct: 1011 VLGGESPNMIVLTGPNMAGKSTLLRQV 1037


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  LLIGPRSSGKTTLLNSVLHQL 104
           LL+GP  SGK TLL+ +  Q+
Sbjct: 284 LLLGPPKSGKKTLLSRLFFQI 304


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 471 VKSRFSHRHIFIFPNEVNDDDRYDIISPLEGRKRLF 578
           V S+ S R I    +EVN+   YDI+ PL GR  ++
Sbjct: 521 VSSKLSARPIE--EDEVNNFSIYDIVLPLPGRNVIY 554


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 630 FSSSATQNPPGADSAIPQ-TISFSLPEA 550
           FS S + N P AD+++PQ + S S+PEA
Sbjct: 86  FSGSGSNNAP-ADTSVPQSSYSNSVPEA 112


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 42  LLIGPRSSGKTTLLNSVLHQLSRE 113
           ++IGP  SGKTT+  +V  +L  E
Sbjct: 18  VVIGPAGSGKTTMAKAVSEKLGFE 41


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   LRRTVLQGESHSALLIGPRSSGKTTLLNSVLHQ 101
           LR+  L+      LL+G  ++GKTT+L  +L++
Sbjct: 7   LRQQKLKEREVRVLLLGLDNAGKTTILKCLLNE 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,598
Number of Sequences: 5004
Number of extensions: 70601
Number of successful extensions: 264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)