Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B12
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm rec...    28   7.7  
AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm rec...    28   7.7  

>AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical
           protein H22K11.4b protein.
          Length = 348

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -1

Query: 213 LDQFVNSINGIFRGASIVSVVGGLRSLALAPTWSKR--QLSFTDQQGSGQNQHKY---QS 49
           + Q  NS+   FRG ++   + G+RS  + P   +   + SF      G  Q  Y    S
Sbjct: 40  ISQLENSLRNTFRGRNVNPYIAGVRSRYIIPRGKEHIFKNSFGTMVYVGTQQKFYPGTMS 99

Query: 48  ATHRLQCLPSLVFN 7
             H LQ +P    N
Sbjct: 100 IVHNLQTMPEFCSN 113


>AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical
           protein H22K11.4a protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -1

Query: 213 LDQFVNSINGIFRGASIVSVVGGLRSLALAPTWSKR--QLSFTDQQGSGQNQHKY---QS 49
           + Q  NS+   FRG ++   + G+RS  + P   +   + SF      G  Q  Y    S
Sbjct: 150 ISQLENSLRNTFRGRNVNPYIAGVRSRYIIPRGKEHIFKNSFGTMVYVGTQQKFYPGTMS 209

Query: 48  ATHRLQCLPSLVFN 7
             H LQ +P    N
Sbjct: 210 IVHNLQTMPEFCSN 223


>AC024882-11|AAX22280.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform b protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 548 LFLSI*KQFIIQHLYFFVTNILINFHLLYYILCKNYTLLTTIRNIIMW 691
           LF +I  +F IQ L  F+ +I+ NF L+Y IL ++   + T + ++++
Sbjct: 2   LFAAI--KFTIQ-LVSFIVSIIFNFTLIYLILTRSPKKMGTYKYLLIY 46


>AC024882-10|AAF60929.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 169,isoform a protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 548 LFLSI*KQFIIQHLYFFVTNILINFHLLYYILCKNYTLLTTIRNIIMW 691
           LF +I  +F IQ L  F+ +I+ NF L+Y IL ++   + T + ++++
Sbjct: 2   LFAAI--KFTIQ-LVSFIVSIIFNFTLIYLILTRSPKKMGTYKYLLIY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,039,016
Number of Sequences: 27780
Number of extensions: 298960
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)