Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B08
(775 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 257 2e-67
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 252 7e-66
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 244 2e-63
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 240 2e-62
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 236 4e-61
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 234 2e-60
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 228 1e-58
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 225 1e-57
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 224 2e-57
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 224 2e-57
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 216 4e-55
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 206 6e-52
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 204 3e-51
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 203 4e-51
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 202 6e-51
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 200 4e-50
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 196 5e-49
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 194 3e-48
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 186 7e-46
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 181 2e-44
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 181 2e-44
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 181 2e-44
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 180 5e-44
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 174 2e-42
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 173 3e-42
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 169 5e-41
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 165 8e-40
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 2e-38
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 159 5e-38
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 157 4e-37
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 153 4e-36
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 153 5e-36
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 153 6e-36
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 149 6e-35
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 135 1e-30
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 130 3e-29
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 128 1e-28
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 124 3e-27
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 122 8e-27
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 117 3e-25
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 117 3e-25
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 116 5e-25
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 114 2e-24
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 114 3e-24
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 113 5e-24
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 112 8e-24
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 110 4e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 109 8e-23
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 108 2e-22
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 107 2e-22
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 107 2e-22
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 106 7e-22
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 100 3e-20
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 100 5e-20
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 99 6e-20
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 100 8e-20
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 99 1e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 97 3e-19
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 95 2e-18
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 94 3e-18
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 93 5e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 93 9e-18
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 92 2e-17
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 91 2e-17
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 91 3e-17
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 91 4e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 91 4e-17
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 91 4e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 90 7e-17
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 89 1e-16
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 89 2e-16
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 89 2e-16
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 86 8e-16
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 86 1e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 85 1e-15
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 84 3e-15
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 83 7e-15
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 82 1e-14
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 82 2e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 81 4e-14
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 81 4e-14
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 77 4e-13
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 77 5e-13
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 75 1e-12
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 75 1e-12
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 74 5e-12
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 73 1e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 70 7e-11
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 68 2e-10
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 66 7e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 2e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 1e-07
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 49 1e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 5e-04
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 46 0.001
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 42 0.013
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 40 0.052
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 38 0.28
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 37 0.64
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 34 4.5
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 34 4.5
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 34 4.5
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 33 6.0
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 257 bits (630), Expect = 2e-67
Identities = 133/210 (63%), Positives = 141/210 (67%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+
Sbjct: 11 RTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRM 70
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 71 NNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 130
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNT
Sbjct: 131 ILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNT 190
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILI 746
SFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 191 SFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 252 bits (617), Expect = 7e-66
Identities = 131/206 (63%), Positives = 139/206 (67%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAELG PGSLIGDDQIYNTIVTAHA N LVPL+LGAPD+AFPR+
Sbjct: 35 RAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 94
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 95 NNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISS 154
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
SFDQ+PLFV AVGITAF AGAIT+LLTDRNLNT
Sbjct: 155 ILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNT 214
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEV 734
SFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 215 SFFDPAGGGDPILYQHLFWFFGHPKL 240
Score = 43.2 bits (97), Expect = 0.007
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 14 RK*IYSTNHKDIGTLYFIFG 73
RK +YSTNHKDIGTLYFIFG
Sbjct: 1 RKWLYSTNHKDIGTLYFIFG 20
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 244 bits (597), Expect = 2e-63
Identities = 128/219 (58%), Positives = 141/219 (64%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAELG PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 99 NNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 159 ILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 218
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+I H
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 257
Score = 36.7 bits (81), Expect = 0.64
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 8 LFSTNHKDIGTLYLIFG 24
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 240 bits (588), Expect = 2e-62
Identities = 125/219 (57%), Positives = 138/219 (63%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S Q PLFV AV +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGII H
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 256
Score = 35.5 bits (78), Expect = 1.5
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 26 YSTNHKDIGTLYFIFG 73
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 236 bits (578), Expect = 4e-61
Identities = 122/219 (55%), Positives = 138/219 (63%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAEL PG+L+GDDQIYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ Q PLFV +V +TA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+I H
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256
Score = 35.5 bits (78), Expect = 1.5
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 26 YSTNHKDIGTLYFIFG 73
+STNHKDIGTLY +FG
Sbjct: 8 FSTNHKDIGTLYLVFG 23
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 234 bits (573), Expect = 2e-60
Identities = 121/219 (55%), Positives = 138/219 (63%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAELG PG+L+G+D IYN IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 38 RAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 98 NNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSS 157
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ Q PLFV +V ITA A IT+LLTDRNLNT
Sbjct: 158 ILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNT 217
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+I H
Sbjct: 218 TFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256
Score = 35.9 bits (79), Expect = 1.1
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY +FG
Sbjct: 7 LFSTNHKDIGTLYLLFG 23
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 228 bits (558), Expect = 1e-58
Identities = 117/219 (53%), Positives = 136/219 (62%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+
Sbjct: 22 RLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRM 81
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 82 NNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASS 141
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ D++ LF +V ITA AGAIT+LLTDRN+NT
Sbjct: 142 IMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNT 201
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
SFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGII H
Sbjct: 202 SFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 240
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 225 bits (550), Expect = 1e-57
Identities = 123/216 (56%), Positives = 142/216 (65%)
Frame = -1
Query: 709 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 530
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 529 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 350
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 349 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 170
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 169 L*I*SSPINDPGFPNSARIKXLKDVPIIPDQIPKNK 62
L I S PI PG PNSARIK L DVP +P PK K
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 224 bits (548), Expect = 2e-57
Identities = 117/221 (52%), Positives = 135/221 (61%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++ H
Sbjct: 216 NTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVSH 256
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 224 bits (547), Expect = 2e-57
Identities = 115/221 (52%), Positives = 136/221 (61%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG I G+ Q+YN ++TAHA N VP+++GAPD+AFP
Sbjct: 39 RMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFP 98
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+
Sbjct: 99 RLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGV 158
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV +V +TAF AGAIT+LLTDRN
Sbjct: 159 SSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNF 218
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGII H
Sbjct: 219 NTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISH 259
Score = 39.1 bits (87), Expect = 0.12
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLYFIFG
Sbjct: 8 LFSTNHKDIGTLYFIFG 24
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 216 bits (528), Expect = 4e-55
Identities = 112/221 (50%), Positives = 136/221 (61%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL P + L+G+ QIYN ++TAHA N LVP+++G+PD+AFP
Sbjct: 44 RMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFP 103
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSLH++G
Sbjct: 104 RLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGA 163
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS S ++PLFV ++ +TAF AGAIT+LLTDRN
Sbjct: 164 SSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNF 223
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+I H
Sbjct: 224 NTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 264
Score = 37.5 bits (83), Expect = 0.37
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
I+STNHKDIGTLY IFG
Sbjct: 13 IFSTNHKDIGTLYLIFG 29
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 206 bits (502), Expect = 6e-52
Identities = 110/221 (49%), Positives = 130/221 (58%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PGS L G+ Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGII H
Sbjct: 217 NTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISH 257
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 204 bits (497), Expect = 3e-51
Identities = 108/221 (48%), Positives = 129/221 (58%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PGS L G+ Q++N +V HA N ++PL++GA D++FP
Sbjct: 37 RMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFP 96
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
RIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL I
Sbjct: 97 RINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSI 156
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS S ++PLFV A+ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNF 216
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+ H
Sbjct: 217 NTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSH 257
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 203 bits (495), Expect = 4e-51
Identities = 109/218 (50%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R EL PG I D+Q+YN+I+TAHA N L+PL LG PD+ FPR
Sbjct: 38 RLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPR 97
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+NNI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+GIS
Sbjct: 98 LNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGIS 157
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S +L LF AV ITA AG IT++LTDRN N
Sbjct: 158 SLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFN 217
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
TSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGII
Sbjct: 218 TSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGII 255
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 202 bits (494), Expect = 6e-51
Identities = 106/198 (53%), Positives = 119/198 (60%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+
Sbjct: 21 RVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRL 80
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 81 NNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ + LFV +V ITA AGAIT+LLTDRN NT
Sbjct: 141 ILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNT 200
Query: 657 SFFDPAGGGDPILYQHLF 710
SFFDPAGGGDPILYQHLF
Sbjct: 201 SFFDPAGGGDPILYQHLF 218
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 200 bits (487), Expect = 4e-50
Identities = 104/202 (51%), Positives = 122/202 (60%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL +PGS++GDD +YN IVTAHA N VPL++GAPD+AFPR+
Sbjct: 39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 99 NNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSS 158
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ ++PLFV +V ITA AGAIT+LLTDR NT
Sbjct: 159 ILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNT 218
Query: 657 SFFDPAGGGDPILYQHLF*FFG 722
+FFDPAGGGDPILYQHLF FFG
Sbjct: 219 TFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 196 bits (478), Expect = 5e-49
Identities = 103/218 (47%), Positives = 125/218 (57%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R EL PG I D+Q+YN+I+T+H N L+P+++G PD+AFPR
Sbjct: 64 RLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPR 123
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+NN+ + I+ENG GTG T+YPPLS +H VDL IF LHL+GIS
Sbjct: 124 LNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGIS 183
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S +L LF AV ITA A AIT+LLTDRNLN
Sbjct: 184 SLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLN 243
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
TSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGII
Sbjct: 244 TSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGII 281
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 194 bits (472), Expect = 3e-48
Identities = 102/221 (46%), Positives = 118/221 (53%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L G+ YN I T H N VP+++GAPD++FP
Sbjct: 40 RLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFP 99
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NN F E G GTG TVYPPLSS +H G SVDL IFS HL GI
Sbjct: 100 RLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGI 159
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
S LPLFV +V +T+F A AIT+LL DRN
Sbjct: 160 GSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNF 219
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++ H
Sbjct: 220 NTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSH 260
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 186 bits (452), Expect = 7e-46
Identities = 101/200 (50%), Positives = 116/200 (58%), Gaps = 2/200 (1%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV A+ +TA AGAIT+LLTDRN
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNF 215
Query: 651 NTSFFDPAGGGDPILYQHLF 710
NTSF+DPAGGGDPILYQHLF
Sbjct: 216 NTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 181 bits (441), Expect = 2e-44
Identities = 90/221 (40%), Positives = 124/221 (56%), Gaps = 2/221 (0%)
Frame = +3
Query: 117 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+I H
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISH 362
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 181 bits (441), Expect = 2e-44
Identities = 90/212 (42%), Positives = 123/212 (58%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 671
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 672 AGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+GGGDP+LY+H+F FFGHPEVYILI+P FG++
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 181 bits (441), Expect = 2e-44
Identities = 90/212 (42%), Positives = 123/212 (58%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 671
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 672 AGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+GGGDP+LY+H+F FFGHPEVYILI+P FG++
Sbjct: 241 SGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 180 bits (437), Expect = 5e-44
Identities = 100/222 (45%), Positives = 123/222 (55%), Gaps = 5/222 (2%)
Frame = +3
Query: 117 RAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R EL PG I ++Q+YN+I+TAHA N L+PL++G PD+AFPR
Sbjct: 66 RLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPR 125
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHL 461
+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF+LHL
Sbjct: 126 LNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHL 185
Query: 462 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 641
+G+SS +L LF + IT++LTD
Sbjct: 186 SGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSSRSRYFLGITMVLTD 238
Query: 642 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
RN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGII
Sbjct: 239 RNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGII 280
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 174 bits (423), Expect = 2e-42
Identities = 94/206 (45%), Positives = 117/206 (56%), Gaps = 4/206 (1%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 342 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 509
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 510 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 689
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271
Query: 690 ILYQHLF*FFGHPEVYILILPGFGII 767
LYQHLF FFGHPEVYI+ILPGFGII
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPGFGII 297
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 173 bits (422), Expect = 3e-42
Identities = 97/213 (45%), Positives = 118/213 (55%), Gaps = 2/213 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PGS L G+ Q++N +V HA N L+PL++GA D AFP
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFP 96
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
RINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL I
Sbjct: 97 RINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSI 156
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV ++ ITAF + IT+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNF 216
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 749
NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 217 NTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 169 bits (412), Expect = 5e-41
Identities = 93/185 (50%), Positives = 106/185 (57%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAEL PG+L+GDDQIYN IVTAHA N L+PL++GAPD+AFPR+
Sbjct: 27 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 86
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 87 NNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISS 146
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S Q PLFV AV ITA A IT+LLTDRNLNT
Sbjct: 147 ILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNT 206
Query: 657 SFFDP 671
+FFDP
Sbjct: 207 TFFDP 211
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 165 bits (402), Expect = 8e-40
Identities = 91/204 (44%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L G++Q++N +V HA N ++PL++GA D AFP
Sbjct: 37 RLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFP 96
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
RINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ I
Sbjct: 97 RINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSI 156
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS + +LPLFV A+ ITA + +T+LL DRN
Sbjct: 157 SSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNF 216
Query: 651 NTSFFDPAGGGDPILYQHLF*FFG 722
NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 217 NTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 2e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 438 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 617
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 618 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 725
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 159 bits (387), Expect = 5e-38
Identities = 90/213 (42%), Positives = 114/213 (53%), Gaps = 2/213 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGF 161
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
SS ++ +PLF AV TA A +T+ + DRN
Sbjct: 162 SSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNF 221
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 749
NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 222 NTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 157 bits (380), Expect = 4e-37
Identities = 82/208 (39%), Positives = 115/208 (55%), Gaps = 2/208 (0%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 671
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 672 AGGGDPILYQHLF*FFGH--PEVYILIL 749
+GGGDP+LY+H+F FFG P + I+I+
Sbjct: 241 SGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 153 bits (372), Expect = 4e-36
Identities = 82/219 (37%), Positives = 109/219 (49%), Gaps = 2/219 (0%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL +PG G Q+YN+++T H N ++PL+LGAP++AFP
Sbjct: 47 RFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFP 106
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+N + F + G G+ T YPPLS S+D I LH GI
Sbjct: 107 RVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGI 165
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
S + DQ+ +FV +T+F AG++ LL DRN
Sbjct: 166 GSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNF 225
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGII
Sbjct: 226 NTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGII 264
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 153 bits (371), Expect = 5e-36
Identities = 80/210 (38%), Positives = 105/210 (50%)
Frame = +3
Query: 138 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 317
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 318 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 497
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 498 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG 677
SF LF+ A ITA AG +T++L DRN NTSF+D G
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 678 GGDPILYQHLF*FFGHPEVYILILPGFGII 767
GGD IL+QH+F FFGHPEVYI++LP FG+I
Sbjct: 228 GGDLILFQHIFWFFGHPEVYIILLPVFGLI 257
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 153 bits (370), Expect = 6e-36
Identities = 81/220 (36%), Positives = 113/220 (51%), Gaps = 1/220 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL +PG + +Y++I+T HA N +PL++ D++ PR+
Sbjct: 40 RIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRL 99
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 100 NNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
F L P+ + + T+ A +T+LL DR+ +
Sbjct: 160 IAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFS 219
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+I H
Sbjct: 220 TSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISH 259
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 149 bits (362), Expect = 6e-35
Identities = 83/211 (39%), Positives = 115/211 (54%)
Frame = +3
Query: 132 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 312 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 491
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 492 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 671
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 672 AGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
+GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 241 SGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 135 bits (326), Expect = 1e-30
Identities = 73/205 (35%), Positives = 102/205 (49%), Gaps = 1/205 (0%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 342 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 518
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 519 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 698
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 699 QHLF*FFGHPEVYILILPGFGIIXH 773
QHLF FFGHPEVYILILP FG+I H
Sbjct: 238 QHLFWFFGHPEVYILILPAFGVISH 262
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 130 bits (315), Expect = 3e-29
Identities = 69/203 (33%), Positives = 99/203 (48%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 339 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 518
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 519 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 698
D++ ++ +T+F ++ DR+ NT FF+ + GDP+LY
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 699 QHLF*FFGHPEVYILILPGFGII 767
QHLF FFGHPEVYI+ILPGFGII
Sbjct: 238 QHLFWFFGHPEVYIMILPGFGII 260
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 128 bits (310), Expect = 1e-28
Identities = 80/219 (36%), Positives = 102/219 (46%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R L +P + +YN +VT H N +P+ L D+ PR+
Sbjct: 136 RLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRL 195
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N++ G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 196 NSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S + V A T+ A IT+LL DRN T
Sbjct: 253 LIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGT 307
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+ H
Sbjct: 308 AFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSH 346
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 124 bits (298), Expect = 3e-27
Identities = 73/169 (43%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
R+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GI
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGI 155
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 617
SS + +LPLFV A+ +TA AG
Sbjct: 156 SSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 122 bits (295), Expect = 8e-27
Identities = 76/216 (35%), Positives = 103/216 (47%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P L D +YN VT H N L+P PD+ FPR+
Sbjct: 35 RLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRM 92
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + F ++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 93 NALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ L LF ++ + + A IT++LTD++L T
Sbjct: 144 LISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGT 201
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
F+D GGDP+LYQHLF FFGHPEVY++ILP FG+
Sbjct: 202 CFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGL 237
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 117 bits (282), Expect = 3e-25
Identities = 69/207 (33%), Positives = 93/207 (44%), Gaps = 6/207 (2%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 345 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 521
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 522 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 686
++ +LPL + + +TA A +LL DR+ T FF GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 687 PILYQHLF*FFGHPEVYILILPGFGII 767
PIL+QHLF FGHPEVYI+ILP +GI+
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGIL 292
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 117 bits (282), Expect = 3e-25
Identities = 82/227 (36%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL +PG + + YN+++T+H N L+PL++GA D+AFPRI
Sbjct: 120 RIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRI 178
Query: 297 NNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLAIFS 452
N I F I E A TG T+Y PLS N A+ G VDL +
Sbjct: 179 NAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLG 236
Query: 453 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 632
LHL+G+S+ S+ L +F + + AI +L
Sbjct: 237 LHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMML 296
Query: 633 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
L DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GII +
Sbjct: 297 LFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGIISY 341
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 116 bits (280), Expect = 5e-25
Identities = 70/217 (32%), Positives = 96/217 (44%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + +++N + T H N VPL++GA D+AFPR+
Sbjct: 58 RIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIGARDVAFPRL 116
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N+ F + + G Y PLSS + VD I L + GI S
Sbjct: 117 NSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWIIGLLIMGIGS 176
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S ++PLFV + + A A+ +LL DR L +
Sbjct: 177 VSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAMLLIDRWLGS 236
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+FFDP GG +L+QH F FGHPEVYILILPGFG+I
Sbjct: 237 AFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMI 273
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 114 bits (275), Expect = 2e-24
Identities = 67/209 (32%), Positives = 96/209 (45%)
Frame = +3
Query: 135 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 314
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 315 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 494
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 495 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 674
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 675 GGGDPILYQHLF*FFGHPEVYILILPGFG 761
GGDP++YQ++F F+ HP VY+ +LP FG
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFG 208
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 114 bits (274), Expect = 3e-24
Identities = 73/217 (33%), Positives = 95/217 (43%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL P ++YN ++T H N L+PL++G D+AFPR+
Sbjct: 53 RTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRL 111
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + F V G T YPPLS G +L I SL L G SS
Sbjct: 112 NAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSS 168
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+PLF A+ T+ A A+ +L D T
Sbjct: 169 ILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGT 228
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
SFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+I
Sbjct: 229 SFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVI 265
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 113 bits (272), Expect = 5e-24
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 2/203 (0%)
Frame = +3
Query: 162 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 342 XXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 515
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 516 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 695
+F + ++ ++ +T+ AIT LL DRN+N++ +D G DP+L
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVL 240
Query: 696 YQHLF*FFGHPEVYILILPGFGI 764
YQHLF FFGHPEVY++ILP FG+
Sbjct: 241 YQHLFWFFGHPEVYVIILPVFGL 263
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 112 bits (270), Expect = 8e-24
Identities = 71/218 (32%), Positives = 98/218 (44%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL PG I D YN T H N ++PL+LGA D+AFPR+
Sbjct: 68 RVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRL 127
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + ++ G TG T Y P S AH +V +F + G SS
Sbjct: 128 NLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSS 183
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-N 653
++ ++PLFV A+ T+ G + +L+T NL
Sbjct: 184 IVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLLVLVTVENLFG 242
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FDPA GGDP+L+QHLF F+ HP VYI++LP FG++
Sbjct: 243 FGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVM 280
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 110 bits (264), Expect = 4e-23
Identities = 69/219 (31%), Positives = 96/219 (43%), Gaps = 3/219 (1%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL P + + D +YN + T H N L+P ++GAPD+AFP++
Sbjct: 62 RGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKL 120
Query: 297 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAG 467
N F G A +G YPP+S + + H L I ++ L+G
Sbjct: 121 NAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSG 180
Query: 468 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 647
ISS F ++P+FV G +LL D +
Sbjct: 181 ISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLS 240
Query: 648 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI
Sbjct: 241 FGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGI 279
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 109 bits (262), Expect = 8e-23
Identities = 70/218 (32%), Positives = 97/218 (44%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R +L P + IG D+ YN I T H LVPL++G IAFPR
Sbjct: 55 RLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVGTRHIAFPR 112
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+N + V+ G G Y PLS G+ D+ + +S
Sbjct: 113 LNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQMITFTEVS 172
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
+ S D++PLFV ++ +T+F A T L+ DR +
Sbjct: 173 ALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTSLILDRLVG 232
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++
Sbjct: 233 THFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMV 270
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 108 bits (259), Expect = 2e-22
Identities = 70/217 (32%), Positives = 92/217 (42%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +LG P + +YN + T H N +VPL++GA D+AFPR+
Sbjct: 57 RIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMIGARDMAFPRL 115
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + V G Y PL+ VD I + L G++S
Sbjct: 116 NALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWIVGIGLTGVAS 175
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ +++PLFV + AF A LL DR+ T
Sbjct: 176 IAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATIQLLFDRHFGT 235
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FF P GGD +L+QHLF FFGHPEVYILILP GII
Sbjct: 236 RFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGII 272
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 107 bits (258), Expect = 2e-22
Identities = 65/217 (29%), Positives = 94/217 (43%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL PG I D YN + T H N L+P+++GA D+AFP++
Sbjct: 61 RLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKL 120
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + F +V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 121 NLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSS 176
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ +LPLFV ++ T+ ++ ++ +
Sbjct: 177 ILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGW 236
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FDPA GGDP+L+QH F F+ HP VYI++LP +I
Sbjct: 237 GIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVI 273
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 107 bits (258), Expect = 2e-22
Identities = 68/219 (31%), Positives = 98/219 (44%), Gaps = 2/219 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL + +YN ++T+H N +PL++ A D+AFPRI
Sbjct: 94 RTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRI 152
Query: 297 NNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
N I F ++ A T T+Y PLS ++ +VD+ + LHL G+
Sbjct: 153 NAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGV 210
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
S+ + L +F + + A+ +LL DRN
Sbjct: 211 SATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNF 270
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+
Sbjct: 271 GTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIV 308
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 106 bits (254), Expect = 7e-22
Identities = 68/218 (31%), Positives = 94/218 (43%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAEL PG ++ +N + T H N ++PL +GAPD+AFPR+
Sbjct: 64 RAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIGAPDVAFPRL 122
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
N F + GA G T+Y PLS I G D+ I + GI
Sbjct: 123 NAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWIVGVGATGIG 182
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S + ++P+F + + + A +L DR L
Sbjct: 183 SVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAALGVLYDRKLG 242
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+DPA GG +L+QHLF FFGHPEVY+L LP FGI+
Sbjct: 243 GHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIV 279
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 100 bits (240), Expect = 3e-20
Identities = 64/216 (29%), Positives = 89/216 (41%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RA+L P + D YN I T H N +VPL +GA D+AFP +
Sbjct: 79 RAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYL 137
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F ++ G T Y PL+SN G + + L +AGI +
Sbjct: 138 NNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGT 197
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ ++P+F IT A+ +L DR
Sbjct: 198 LMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGA 257
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
FF GG P+L+ +LF +GHPEVYI+ILP FGI
Sbjct: 258 HFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGI 293
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 100 bits (239), Expect = 5e-20
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 6/181 (3%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 419
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 600 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 765 I 767
+
Sbjct: 264 V 264
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 99 bits (238), Expect = 6e-20
Identities = 61/218 (27%), Positives = 92/218 (42%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + + YN I+T H N +VPL+LGA D+A PR+
Sbjct: 50 RTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRV 109
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
N + GA G T Y P S A VD + ++ L G S
Sbjct: 110 NAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFS 166
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S S ++P++V +V + A ++L +R +
Sbjct: 167 SLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIG 226
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
S+F+PA GGDP+L+Q F F+ HP VY+++LP GI+
Sbjct: 227 LSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGIL 264
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 99.5 bits (237), Expect = 8e-20
Identities = 58/216 (26%), Positives = 93/216 (43%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + Q YN ++T H N +VPL +GA D++FP +
Sbjct: 50 RIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFL 108
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + F + G T Y LS + +G +D + L ++G+ +
Sbjct: 109 NALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGT 166
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
++ +LPLF + + + +++ DR T
Sbjct: 167 LIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGT 226
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
+FF+P GG+ ++++HLF FGHPEVYILILP FGI
Sbjct: 227 NFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGI 262
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 99.1 bits (236), Expect = 1e-19
Identities = 67/217 (30%), Positives = 93/217 (42%), Gaps = 2/217 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P S Y VT H N +VPL +GA D+AFPR+
Sbjct: 47 RVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQIGARDLAFPRL 105
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
N + + E+GA G T+Y PL++ I G +DLA ++ L +S
Sbjct: 106 NALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLAALAIFLFSLS 165
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
+ ++P+F ++ T +LL DRNL
Sbjct: 166 VTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGGALLLLDRNLG 225
Query: 654 TSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFG 761
T FF +PAGG +L+ HLF FFGHPEVYIL+ P G
Sbjct: 226 TEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALG 260
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 97.5 bits (232), Expect = 3e-19
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 15/218 (6%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 339 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 506
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 507 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 671
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 672 ------AGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
AGGG P+L+QHLF F+ HP VYI+ILP G++
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMV 303
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 94.7 bits (225), Expect = 2e-18
Identities = 72/232 (31%), Positives = 97/232 (41%), Gaps = 15/232 (6%)
Frame = +3
Query: 117 RAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R +LG PG+ D Y +T H N L+PL++GA D+ FP
Sbjct: 64 RLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPY 123
Query: 294 INNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLA 464
+N + + V G G G T+YPP + S + + L + SL L
Sbjct: 124 VNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILF 183
Query: 465 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTD 641
I + +LPL V + T G++ +LL D
Sbjct: 184 IIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-D 242
Query: 642 RNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGFGII 767
R L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP FGI+
Sbjct: 243 RLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIV 294
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 94.3 bits (224), Expect = 3e-18
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 2/219 (0%)
Frame = +3
Query: 117 RAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R EL G I DD +YNT + H N +PL++GA D+AFPR
Sbjct: 40 RLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPR 99
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+N + + + T YPP S I H + FS+ L G +
Sbjct: 100 VNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFA 156
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNL 650
S +++L +FV A + AF G A+T+L D+ +
Sbjct: 157 SILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYI 215
Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
T FFD A GGD + YQ+LF F+ HP VY++ LP ++
Sbjct: 216 GTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 93.5 bits (222), Expect = 5e-18
Identities = 50/96 (52%), Positives = 58/96 (60%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RAELG PG+L+GDDQ N IVTAHA N LVPL++GAPD+AFPR+
Sbjct: 39 RAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRM 98
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 404
NN+ F VE GAGTG TVYPPL+
Sbjct: 99 NNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 92.7 bits (220), Expect = 9e-18
Identities = 59/217 (27%), Positives = 89/217 (41%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + + YN + T H L+PL++GA D+ FPR+
Sbjct: 81 RLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMIGARDLVFPRL 139
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ + + G +Y PLS++ G S D + + LA I+S
Sbjct: 140 GAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWLIGITLAEIAS 199
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S ++P+ + + TAF +L +R L
Sbjct: 200 VTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSILLEAERLLGL 259
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FFD GGDP+L+QHLF FGHPEVYI+ LP G++
Sbjct: 260 PFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMV 296
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 91.9 bits (218), Expect = 2e-17
Identities = 60/217 (27%), Positives = 89/217 (41%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + + Y+++ T H N L PL+LG+ D+AFPR+
Sbjct: 75 RIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRL 133
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ + G Y PL+S G ++D+ + L GIS+
Sbjct: 134 TAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYGLGMILLGIST 193
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S D+LP+ V + + A +L DRN T
Sbjct: 194 TGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGT 253
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FFD A GG P+L+QHLF F HP VY+++LP GI+
Sbjct: 254 HFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIV 290
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 91.5 bits (217), Expect = 2e-17
Identities = 67/218 (30%), Positives = 95/218 (43%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
RAEL PG+ I D +N + T H N VP+++ D+A+P+
Sbjct: 46 RAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMVRYKDMAYPK 104
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
+N I F + T PP S I+ G + D+ IF L + GIS
Sbjct: 105 LNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWIFGLKILGIS 158
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S S Q+PL + ++ A A+ +LLTDR
Sbjct: 159 SILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALLMLLTDRLGV 218
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+ FF+PA GGDPI Y HLF F HPEVY+L++P G++
Sbjct: 219 SGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 91.1 bits (216), Expect = 3e-17
Identities = 60/217 (27%), Positives = 86/217 (39%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RA+L P S + YN + T H L+P +LG+ D+AFPR+
Sbjct: 55 RAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLLGSRDLAFPRL 113
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
F + +G +YPPLSS + G + D + + IS+
Sbjct: 114 TAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWLIGITFVEISA 173
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S ++P+F +TA +L +R +
Sbjct: 174 IAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSILLELERAFDM 233
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FF A GGD +L+QHLF FGHPEVYI+ LP G I
Sbjct: 234 PFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 90.6 bits (215), Expect = 4e-17
Identities = 60/200 (30%), Positives = 84/200 (42%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 345 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 524
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 525 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 704
+P+F GA+ +L DR L+ FF GG+ ++Y +
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLN 278
Query: 705 LF*FFGHPEVYILILPGFGI 764
LF +GHPEVYIL+LP FGI
Sbjct: 279 LFWAWGHPEVYILVLPAFGI 298
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 90.6 bits (215), Expect = 4e-17
Identities = 59/217 (27%), Positives = 88/217 (40%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + D + YN + + H ++PL+LG D+ FPR+
Sbjct: 62 RLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLMLGTRDMTFPRL 120
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N + ++ G YPPL+ G +D + IS+
Sbjct: 121 NAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYTTVVTFMEISA 180
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S +++P+FV AV + +F A +L DR
Sbjct: 181 LVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASLMLALDRMAGM 240
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FF A GDPIL+QHLF FFGHPEVYI+ +P G++
Sbjct: 241 HFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMV 276
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 90.6 bits (215), Expect = 4e-17
Identities = 69/200 (34%), Positives = 81/200 (40%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R L G +IG QI VTA A L PL +GAP +A PR+
Sbjct: 28 RXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGAPXMAXPRL 87
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N+ F + G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 88 XNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
++ LF A AIT+L R N
Sbjct: 148 XLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITMLXXXRXXNX 207
Query: 657 SFFDPAGGGDPILYQHLF*F 716
SFF P G P + F F
Sbjct: 208 SFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 89.8 bits (213), Expect = 7e-17
Identities = 52/120 (43%), Positives = 62/120 (51%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+
Sbjct: 22 RTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRM 81
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
NN+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 82 NNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 89.0 bits (211), Expect = 1e-16
Identities = 65/218 (29%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
Frame = +3
Query: 153 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 332
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 333 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 500
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 501 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 671
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIY 277
Query: 672 -AG------GGDPILYQHLF*FFGHPEVYILILPGFGI 764
AG GG P+L+QHLF F GHPEVYI+++P GI
Sbjct: 278 IAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGI 315
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 88.6 bits (210), Expect = 2e-16
Identities = 62/221 (28%), Positives = 89/221 (40%), Gaps = 4/221 (1%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L PG + + +N + T HA N +PL++GA D+AFPR+
Sbjct: 55 RLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMIGARDVAFPRL 113
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 464
N + ++ G G Y L+S G D L L
Sbjct: 114 NAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGPDFWTLGLLLL 173
Query: 465 GISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDR 644
GI + + ++P+FV +T+ A+ +L+ DR
Sbjct: 174 GIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVTVALIMLMFDR 233
Query: 645 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+FF+ GG + YQHLF FGHPEVYILILP GII
Sbjct: 234 TFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGII 274
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 88.6 bits (210), Expect = 2e-16
Identities = 59/200 (29%), Positives = 82/200 (41%)
Frame = +3
Query: 165 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 344
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 345 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 524
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 525 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 704
+P+F A+ +L DR L+ F GG+P++Y +
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVN 277
Query: 705 LF*FFGHPEVYILILPGFGI 764
LF +GHPEVYILILP FG+
Sbjct: 278 LFWAWGHPEVYILILPAFGV 297
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 86.2 bits (204), Expect = 8e-16
Identities = 60/218 (27%), Positives = 86/218 (39%), Gaps = 1/218 (0%)
Frame = +3
Query: 117 RAELGNP-GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 293
R +L P L+G D YN I T H L+P +L A D+ FPR
Sbjct: 65 RTQLAVPENDLVGQD-FYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQMLAARDLPFPR 122
Query: 294 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
++ + G +YPPL+ G + D + + IS
Sbjct: 123 LSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWLLGIGFIEIS 182
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
+ S ++P+F A+ I A A +L +R+
Sbjct: 183 AIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATMLLEIERSFG 242
Query: 654 TSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FF GGDP+L+QHLF FFGHPEVYI+ LP G++
Sbjct: 243 WPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLV 280
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 85.8 bits (203), Expect = 1e-15
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 419
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIA 196
Query: 600 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLV 252
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 85.4 bits (202), Expect = 1e-15
Identities = 57/217 (26%), Positives = 87/217 (40%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
RA+L +P S + Y + T H L+P +LG+ D+A+PR+
Sbjct: 55 RAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKMLGSRDLAYPRL 113
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ F + +G +YPPL+S + G + D + + IS+
Sbjct: 114 SAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWLLGITFVEISA 173
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
S D++P++ +TA +L +R
Sbjct: 174 IAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSILLELERAFGL 233
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
FF A GGD +L+QHLF FGHPEVYI+ LP G I
Sbjct: 234 PFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 84.2 bits (199), Expect = 3e-15
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 16/231 (6%)
Frame = +3
Query: 129 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 308
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 309 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 473
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 654 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI+ H
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSH 304
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 83.0 bits (196), Expect = 7e-15
Identities = 54/174 (31%), Positives = 74/174 (42%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGV 317
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 82.2 bits (194), Expect = 1e-14
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Frame = +3
Query: 378 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 548
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 549 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 728
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 729 EVYILILPGFGII 767
EVY+LI+P FG I
Sbjct: 403 EVYVLIIPTFGFI 415
Score = 39.5 bits (88), Expect = 0.091
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 117 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL +P S GD Y +VTAH N L+P +G+ D+A+P
Sbjct: 86 RMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYP 145
Query: 291 RINNIRF 311
R+N+I F
Sbjct: 146 RLNSIGF 152
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 81.8 bits (193), Expect = 2e-14
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = +3
Query: 645 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIXH 773
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+I H
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISH 233
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 438 LAIFS 452
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 5e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 557 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 724
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 80.6 bits (190), Expect = 4e-14
Identities = 49/173 (28%), Positives = 75/173 (43%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMV 339
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 80.6 bits (190), Expect = 4e-14
Identities = 50/174 (28%), Positives = 76/174 (43%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGI 292
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 77.4 bits (182), Expect = 4e-13
Identities = 55/217 (25%), Positives = 84/217 (38%), Gaps = 14/217 (6%)
Frame = +3
Query: 159 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 339 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 509
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 510 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 677
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 678 -------GGDPILYQHLF*FFGHPEVYILILPGFGII 767
GG P+L+QHLF F+ HP VYI++LP G++
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMV 306
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 77.0 bits (181), Expect = 5e-13
Identities = 53/216 (24%), Positives = 79/216 (36%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L P + YN ++T HA N +PL LG D+A PR+
Sbjct: 58 RVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRL 117
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
N G T Y PL+ + G SV + L+ G+ S
Sbjct: 118 NTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN--GLGS 175
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
++P+F ++ T+ A + + L
Sbjct: 176 LLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGL 235
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
S F+P GG P+LYQ F F+ HP VY+++LP GI
Sbjct: 236 SMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 75.4 bits (177), Expect = 1e-12
Identities = 52/212 (24%), Positives = 81/212 (38%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R +L PG+ +N T H L+P +LGA D+ FPR+
Sbjct: 83 RVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDLPFPRL 141
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+ + + + +G +YPPL++ G D+ + L ++S
Sbjct: 142 SAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSFIEVAS 199
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ +PL+ V + + +R +
Sbjct: 200 IAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEMERGFDW 259
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILP 752
FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 260 PFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 75.4 bits (177), Expect = 1e-12
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 425
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 605
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 606 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 761
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 73.7 bits (173), Expect = 5e-12
Identities = 44/101 (43%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG L GD Q+YN I+TAHA N LVP+++GAPD+AFP
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFP 95
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
R+NNI F VE GAGTG TV LS I
Sbjct: 96 RLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 72.5 bits (170), Expect = 1e-11
Identities = 47/175 (26%), Positives = 73/175 (41%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG I
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFI 317
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 396 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 575
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 576 TAFXXXXXXXXXAGAITILLTDR 644
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 230 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 355
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 69.7 bits (163), Expect = 7e-11
Identities = 56/230 (24%), Positives = 87/230 (37%), Gaps = 13/230 (5%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R EL + G+ + YN V+ H N LVPL +GA D+AFPR+
Sbjct: 48 RLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQIGADDLAFPRL 106
Query: 297 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IAHRGRSVDLAIFSLHLAGI 470
N + + G T+Y PL++ I G + +L +
Sbjct: 107 NALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATSVVLALIMFTA 166
Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
+ +P+F ++ +T + A+ IL +D L
Sbjct: 167 AVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAALMILASDHIL 226
Query: 651 NTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
T++F D G +L+ HLF FFGHPEVYI+ P G++
Sbjct: 227 GTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPALGVM 276
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/44 (70%), Positives = 32/44 (72%)
Frame = +2
Query: 644 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNXSY 775
K KYIIF S W F+STFILIFWT SLYFNFT IWYN SY
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSY 50
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 66.5 bits (155), Expect = 7e-10
Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 117 RAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG+ I G+ Q+YN ++TAHA N VP+++G+PD+AFP
Sbjct: 40 RMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFP 99
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
R+NNI F +VE G G+G TV
Sbjct: 100 RLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
Score = 36.7 bits (81), Expect = 0.64
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 2e-09
Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL N GS L G+ Q +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFA 101
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
R+NNI F +VE GAGTG TV SS +
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 354 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 540 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 719
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 720 GHPEVYILIL 749
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 58.8 bits (136), Expect = 1e-07
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Frame = +3
Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
R EL PG+ L G+ Q++N +V HA N L+PL++GA D++F
Sbjct: 37 RLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFA 96
Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
R+NNI F +VE+GAGTG TV
Sbjct: 97 RLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 48.8 bits (111), Expect = 1e-04
Identities = 40/172 (23%), Positives = 63/172 (36%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 560 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 712
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 5e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 236 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 415
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 416 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 595
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 596 XTTCFSWSYYNIINRSKLKY 655
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +3
Query: 714 FFGHPEVYILILPGFGIIXH 773
FFGHPEVYILILPGFG+I H
Sbjct: 2 FFGHPEVYILILPGFGMISH 21
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 42.3 bits (95), Expect = 0.013
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +3
Query: 714 FFGHPEVYILILPGFGIIXH 773
FFGHPEVY+LILP FGI+ H
Sbjct: 1 FFGHPEVYVLILPVFGIVSH 20
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 40.3 bits (90), Expect = 0.052
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 603 XXXAGAITILLTDRNLNT 656
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
Score = 33.1 bits (72), Expect = 7.9
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 117 RAELGNPGSLIGDDQIYNTIVTAHA 191
R EL GS++ +QIYNT+VT+HA
Sbjct: 22 RLELETCGSVLRSEQIYNTLVTSHA 46
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 37.9 bits (84), Expect = 0.28
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 701 TFILIFWTS*SLYFNFTRIWYNXSY 775
+ ++IFW+S SLYFN IWYN Y
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPY 26
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia
polymorpha (Liverwort)
Length = 802
Score = 36.7 bits (81), Expect = 0.64
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGTLY IFG
Sbjct: 9 LFSTNHKDIGTLYLIFG 25
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 33.9 bits (74), Expect = 4.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 678 GGDPILYQHLF*FFGHPEVYILILPGF 758
G DP+L + LF F GHP VY +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2;
Eukaryota|Rep: Maturase-like protein - Pellia epiphylla
Length = 843
Score = 33.9 bits (74), Expect = 4.5
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 23 IYSTNHKDIGTLYFIFG 73
++STNHKDIGT Y IFG
Sbjct: 9 LFSTNHKDIGTPYLIFG 25
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.9 bits (74), Expect = 4.5
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 572 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 751
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 752 RI 757
I
Sbjct: 154 SI 155
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 33.5 bits (73), Expect = 6.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 684 DPILYQHLF*FFGHPEVYILILPGF 758
+P+L + LF FFGHP VY +LP +
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 583,250,412
Number of Sequences: 1657284
Number of extensions: 10008987
Number of successful extensions: 22696
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 20918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22428
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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