Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B05
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.2  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   5.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   5.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   6.6  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 194 NVWNEFVVIGKLVVFKFVVITHF-LIST*LL*IV 96
           N WN+F       VF F +IT   L ST +L IV
Sbjct: 62  NKWNQFRSYSNFSVFLFDIITIVTLTSTSILLIV 95


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 FPNNDEFIPYVTAGNLAS 215
           F NND+  P   AGNL S
Sbjct: 346 FDNNDQGPPQDDAGNLIS 363


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 FPNNDEFIPYVTAGNLAS 215
           F NND+  P   AGNL S
Sbjct: 347 FDNNDQGPPQDDAGNLIS 364


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 FPNNDEFIPYVTAGNLAS 215
           F NND+  P   AGNL S
Sbjct: 347 FDNNDQGPPQDGAGNLIS 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,160
Number of Sequences: 336
Number of extensions: 2947
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)