Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B05
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   3.1  
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    27   3.1  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   9.4  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 505 SPRFQGSSKAANNLAKALCPS 443
           SPR +GSSKA  NL  A C S
Sbjct: 404 SPRNKGSSKALENLVCANCSS 424


>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = -2

Query: 448 PSISMFAVMLSGRET*SSHSTVLPCDTPIISYHPSSGSSKGFLKRI 311
           PS+S+  V+ SG    S+ S VLP D PI  YH      K  L+ I
Sbjct: 51  PSVSIVPVLRSGMSMMSAFSKVLP-DVPI--YHIGIFREKSTLQPI 93


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 124 KKWVITTNLKTTNFPITTNSFHTL 195
           K W +T+N+     PI+    HTL
Sbjct: 261 KDWTVTSNVPNKEPPISVQLLHTL 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,884
Number of Sequences: 5004
Number of extensions: 49586
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)