Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B05
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0690 + 5221957-5223951                                           29   4.2  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    28   5.6  
01_07_0231 + 42176598-42178117,42178232-42179753                       28   7.4  
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233...    28   7.4  

>07_01_0690 + 5221957-5223951
          Length = 664

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 291 VDDQEVLIRLRKPLDEPLEGWYEI-IGVSQGKTVLCEDYVSLPDN 422
           VDD  ++     PLD P EG +E   G   G+      +VS  DN
Sbjct: 417 VDDSSMVFANIHPLDSPAEGGHEAEAGAGGGRAAPAPSWVSSLDN 461


>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
            14397510-14397609
          Length = 2033

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = +3

Query: 219  NGAKVTLWGKVTRVSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWY----EIIGVSQGKT 386
            N  ++  W +  +    +G   + V   E+L+ L++ L    E +     EI+ +++   
Sbjct: 1295 NNVQMLEWNEQLKQELQQGCEREEVLKAEILV-LQEKLSCSRESYQTSQNEIVSLTEKNE 1353

Query: 387  VLCEDYVSLPDNITANIDIDG 449
             LC++Y SL +N  A  D +G
Sbjct: 1354 TLCKEYQSLIENYNALEDENG 1374


>01_07_0231 + 42176598-42178117,42178232-42179753
          Length = 1013

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 493 QGSSKAANNLAKALCPSISMFAVMLSGRET*SSHSTVLPCDTPIIS 356
           Q  S A NNL+  L P +S+ A + S   + ++ S  LP D P+++
Sbjct: 97  QSLSVARNNLSGELPPGLSLLASLRSIDLSYNAFSGPLPGDVPLLA 142


>01_06_0120 +
           26622285-26622433,26623156-26623219,26623310-26623399,
           26623588-26623644,26623832-26623880,26624320-26624396,
           26624918-26624957,26625037-26625131,26625525-26625689,
           26625777-26625887,26625971-26626058,26626715-26626781,
           26626955-26627063,26627155-26627272,26628345-26628590,
           26628956-26629095,26629262-26629444,26629560-26629679,
           26629932-26629967
          Length = 667

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 258 VSASEGFYVKTVDDQEVLIRLRKPLDEPLEGWYEIIGVSQGKTVLCED 401
           VSA +  +V     +  L+ +  P  E LE W    G+S     LCE+
Sbjct: 550 VSAIDSIWVYGNSFESFLVAVVNPNKEALESWAAANGISGDLEALCEN 597


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,543
Number of Sequences: 37544
Number of extensions: 253251
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)