Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B03
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   2.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   6.7  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 474 DWQMVSRYTSHGYLTTRRRVGSQCVHGVQAWFFWSQKVRPRSHK 343
           DW     + ++  L + R   +   HGVQ W F   KV+  + K
Sbjct: 386 DWLATDLWNNNVKLVSDRIRANVASHGVQVWRFQQYKVKNTNDK 429


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 125 ICESLMLL*MIFNRTAQISIVFFAYTLARS 36
           +C  + L  +IFN  A ++ + FAYT   S
Sbjct: 466 VCSMVTLYFIIFNIAAFVTFIVFAYTAVGS 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,872
Number of Sequences: 5004
Number of extensions: 56024
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)