Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B03
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0435 - 3164421-3165032                                           31   1.00 
03_02_0771 + 11041882-11042073,11042669-11042851,11042946-110430...    29   3.0  
08_01_0944 - 9368901-9369158,9369460-9369839,9370072-9370314,937...    29   4.0  
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40...    29   4.0  
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    29   4.0  
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    28   7.0  
04_04_0316 - 24338774-24339367                                         28   9.3  

>02_01_0435 - 3164421-3165032
          Length = 203

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 357 PRSHKPPPHTLPSASVATSTHN 292
           P  H+PP H  P+A+ ATS+H+
Sbjct: 81  PPQHQPPQHLPPAAAAATSSHS 102


>03_02_0771 +
           11041882-11042073,11042669-11042851,11042946-11043020,
           11043089-11043283,11043380-11043478,11044189-11044352,
           11045676-11045742,11045842-11045894,11046287-11046413,
           11047439-11047627,11048201-11048287,11048411-11048565,
           11048814-11048933,11049043-11049268,11049729-11049788,
           11049877-11050050,11050138-11050247,11050417-11050582
          Length = 813

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 683 LLAPRERKRHIHSRPGSNW 627
           L AP ER  HIH RP  NW
Sbjct: 599 LSAPYERASHIHERPVVNW 617


>08_01_0944 -
           9368901-9369158,9369460-9369839,9370072-9370314,
           9370607-9370655
          Length = 309

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 381 FFWSQKVRPRSHKPPPHTLPSASVATSTHNFVMSPCITP 265
           F W +K + RS   P   +PS+S      N ++SP I P
Sbjct: 125 FVWVKK-KKRSSSSPKQDVPSSSAVLPQPNLIISPEIVP 162


>06_01_0041 +
           403634-403817,404154-404332,404431-404536,404620-404936,
           405231-405605,406199-406283,406570-408066,408575-408738
          Length = 968

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -2

Query: 482 RRWTGRWYPGTLHMGI*QRGAGLGHSACTGCRPGSSGPKRYAPAHTNPHPILCPVP 315
           R W  + + G L  G+  R  G G    +  R  +  P R +  +  P P   P P
Sbjct: 71  RNWQNQEHDGLLGSGVLPRPPGYGGQVASKDRGNTYQPNRTSERYQPPRPKAAPFP 126


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 421 QGWVTVRAR-GAGLVLLVPKGTPPLTQTPTPYFAQCQCSD*H 299
           QG+ T+RAR   G V +VP G P +  +      Q  C D H
Sbjct: 388 QGYETIRARLSRGTVFVVPSGHPIVVTSSRDSTLQIVCFDVH 429


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 735 DLSARFITFHCLAWYS-DITSTT 670
           DL A F+TFHCLA  S D  STT
Sbjct: 327 DLDACFLTFHCLATPSKDSDSTT 349


>04_04_0316 - 24338774-24339367
          Length = 197

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -1

Query: 498 GHIPSS*MDWQMVSRYTSHGYLTTRRRVGSQCVHGVQAWFFWSQKVRPRSHKPPPH-TLP 322
           GH+     D+ +      HG      R  ++ V  V  W    Q+  P    PPP  T  
Sbjct: 66  GHVFHKDCDYSVDKWLREHGLSCPECRKKARSVR-VLPWRARPQQPLPEEQNPPPQETSA 124

Query: 321 SASVATSTH 295
           S+S ++STH
Sbjct: 125 SSSSSSSTH 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,183
Number of Sequences: 37544
Number of extensions: 445676
Number of successful extensions: 1309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)