Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B03
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               36   0.047
SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)               34   0.14 
SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)          29   3.1  
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)                28   7.2  
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       28   9.5  
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           28   9.5  

>SB_11794| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 331

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 347 CERGRTFWDQKN-QACTPCTHCDPTLRLVVKYPCEVYRDTICQSIYELG 490
           CE GRT+ D +   +C PC HCD     V    C  + + +C +  ++G
Sbjct: 153 CEAGRTYSDGEGIGSCNPCGHCD---GFVTTKNCTTHSNIVCSTTCKMG 198


>SB_50338| Best HMM Match : TNFR_c6 (HMM E-Value=1.4e-05)
          Length = 374

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 347 CERGRTFWDQKN-QACTPCTHCDPTLRLVVKYPCEVYRDTICQSIYELG 490
           CE GRT+ D +   +C PC HCD     V    C  + + +C +  + G
Sbjct: 98  CEAGRTYSDGEGIGSCNPCGHCD---GFVTTKNCTTHSNIVCSTTCKKG 143


>SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 426 RRRVGSQCVHGVQAWFFWSQKVRPRSHKP 340
           R  +G +  +    WF+WS +V P  H P
Sbjct: 571 RSSIGIEIWYSYATWFWWSSRVYPVCHNP 599


>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
          Length = 828

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 425 GAGLGHSACTGCRPGSSGPKRYAPAHTNP 339
           G G G++   G  PG   P  Y P +TNP
Sbjct: 582 GYGPGYTNPPGYGPGYPNPPGYGPGYTNP 610


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 383 GSSGPKRYAPAHTNPHP 333
           G+SGP++YAP H N  P
Sbjct: 35  GNSGPQKYAPYHGNSGP 51


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 371 DQKNQACTPCTHCDPTLRLVVKYPCEVYRDTIC 469
           D K +ACTPC +      + +  PC    DTIC
Sbjct: 118 DTKCEACTPCPN-----SMFIATPCSPTADTIC 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,139,478
Number of Sequences: 59808
Number of extensions: 505499
Number of successful extensions: 1167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)