Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B03
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    30   2.1  
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    28   8.3  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   8.3  

>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = -1

Query: 471 WQMVSRYTSHGYLTTRRRVGSQCVHGVQAWFFWSQKVRPRSHKPPPHTLPSASVATSTHN 292
           W      TSH +   RR+V S   H V  W F S+K+  R  +     L  A +  +   
Sbjct: 552 WPRDEMVTSHLFHYARRKVTSHVRHFVIFWHFHSKKLTTRGRRDFRACLKPARLTPAFRL 611

Query: 291 FVMSPCITPA 262
           F    C   A
Sbjct: 612 FSTFLCFVEA 621


>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 GGGLCERGRTFWDQKNQACTPCTHC 409
           G G  +  R +W+Q++Q C P ++C
Sbjct: 481 GVGGSQLSRWYWNQQSQCCLPFSYC 505


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 GGGLCERGRTFWDQKNQACTPCTHC 409
           G G  +  R +W+Q++Q C P ++C
Sbjct: 899 GVGGSQLSRWYWNQQSQCCLPFSYC 923


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,577,372
Number of Sequences: 27780
Number of extensions: 353838
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)