Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B01
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.3  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 377 CRYQLRTATRKRSLLPSATREPDLQPHSSDRAG 475
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 780 CCMRWQLQSGLRDHLR 733
           C M+W L S +  HLR
Sbjct: 524 CGMKWPLLSTINRHLR 539


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPQVVPEARLQL 765
            CLHP  F C   G +    +P   L L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLL 1046


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPQVVPEARLQL 765
            CLHP  F C   G +    +P   L L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLL 1046


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPQVVPEARLQL 765
            CLHP  F C   G +    +P   L L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLL 1046


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 685  CLHPPSFQCSSDGEVGPQVVPEARLQL 765
            CLHP  F C   G +    +P   L L
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLL 1046


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,605
Number of Sequences: 336
Number of extensions: 4197
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)