Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_B01
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 2.0
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 28 2.0
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 27 3.5
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.2
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 6.2
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 26 6.2
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 26 6.2
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 8.2
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 26 8.2
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 8.2
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 345 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 482
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 154 KRIPTIPTMETWTPFPTARATVTE 225
K IPT PT E+ PFP+ A T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = -1
Query: 566 LWYFRSGRRFGSLSNRYQSG*VQFDLFSGVSQLGRLSGAEDRVLWL 429
L Y G+ + ++ +G ++ F GV +LG + G + +W+
Sbjct: 26 LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWI 71
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -1
Query: 302 HERGH--ATAHSSGVVVRIIVTA 240
H RGH ATA + G V+R+I T+
Sbjct: 176 HPRGHLIATASAKGTVIRVITTS 198
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 310 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 450
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = -1
Query: 785 TCAVCVGNCSRASGTTCGPTSPSE 714
TCA+C+ C + C S E
Sbjct: 83 TCAICIRQCHKCESNVCSMCSKQE 106
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 276 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 386
+G GM+AF++ P P+ +VY RR T ++
Sbjct: 9 LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 311 LAVHERGHATAHSSGVVVRIIVTAHDQASSVTVA 210
L H+R + H+S +V I+V +HD AS+ A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -1
Query: 761 CSRASGTTCGPTSPSEEHWKEGGCRHSGW 675
C+R + T P E+WKE GW
Sbjct: 622 CTRGNQVQAFYTLPEYEYWKEANNNGRGW 650
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 291 AAFMYRQPEAAQAPSTGQVYIP 356
A F+Y +PE+ +PS G YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -1
Query: 806 ACGDASSTC-AVCVGNCSRASGTTCGPTSPSEEHWKEGGC 690
ACG A TC AV G A P +E H G C
Sbjct: 166 ACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFC 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,212
Number of Sequences: 5004
Number of extensions: 61691
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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