Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_B01
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  36   0.043
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      31   1.2  
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)         29   6.6  
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   29   6.6  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 35.9 bits (79), Expect = 0.043
 Identities = 30/102 (29%), Positives = 36/102 (35%)
 Frame = +1

Query: 163  PTIPTMETWTPFPTARATVTEEAWS*AVTIILTTTPELWAVAWPRSCTASPKPHRRLQRA 342
            PT  T  T TP  TA  T T E  +   T   TTTPE            + KP     + 
Sbjct: 1772 PTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPE------------TTKPRTTTPKT 1819

Query: 343  RCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 468
                   AA+  P+P T+        T  N  T   A  K P
Sbjct: 1820 TTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861


>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/61 (42%), Positives = 33/61 (54%)
 Frame = +3

Query: 309 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 488
           Q E A A S   V +P+R  QT +  S  P+Q N+V  PQ  E P  S T A  LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679

Query: 489 K 491
           +
Sbjct: 680 Q 680


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 29/102 (28%), Positives = 36/102 (35%)
 Frame = +1

Query: 163 PTIPTMETWTPFPTARATVTEEAWS*AVTIILTTTPELWAVAWPRSCTASPKPHRRLQRA 342
           P   T ET TP  T   T T    +   T   TTTPE      PR+ T      ++    
Sbjct: 171 PRTTTPETTTPETTTPRTTTPVTTTPRTTTPETTTPE---TTTPRTTTPETTTPKK---- 223

Query: 343 RCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 468
                  AA+  P+P T+        T  N  T   A  K P
Sbjct: 224 -----TTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 260


>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = +1

Query: 232 WS*AVTIILTTTPE-----LWAVAWPRSCTASPKPHRRLQRARCTYLIV--AARPLPIPA 390
           W+ A T+     P+     +W +AW  S    P+ HRR +  R  + +      P   P 
Sbjct: 684 WTLAWTVSTPLIPQEHRRTVWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPG 743

Query: 391 TYRN 402
           T +N
Sbjct: 744 TQKN 747


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 201 YGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQ 326
           YG    + G  V++ Y  P Y   A  GG  A ++ QP A +
Sbjct: 142 YGRNAPHPGSTVLTVYRRPTYRAIATPGGACATLFLQPGAGR 183


>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
          Length = 636

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
 Frame = +1

Query: 673 PHPECLHPPSFQCSSDGEVGPQVVPEARLQLPTHTAQV---EEASPQAXPPXTVDP 831
           PHP    PP       G+  P + P    Q PT   Q    +  SP   PP  + P
Sbjct: 529 PHPNSSSPPVSSQGMPGQPPPLMKPSVVQQRPTFPNQSRMGQSGSPLQGPPPLIKP 584


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 815 GGXACGDASSTCAVCVGNCSRASGTTCGPTSPSEEHWKE 699
           G   CG    +C+ C G C  ++G  C P    ++  +E
Sbjct: 97  GRYYCGRQVLSCSCCDGFCGTSNGCNCPPCQKLDQEERE 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,059,773
Number of Sequences: 59808
Number of extensions: 539002
Number of successful extensions: 2149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2142
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)