Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A22
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   2.5  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   4.3  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.9  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 155  MSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKVIFEKKKSKWD*NYRICKNCK 325
            +++G     L+LG   + R   +S+GY   + +  K +  + K ++D N+     CK
Sbjct: 898  LTVGSDAVCLSLGDSQFHRLSCDSVGYNIEVKRYVKKVSGQGKMRYDYNFWSKNECK 954


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 113 VVNFELYAKPNIVIMSIGLTCFGLALGYIAY 205
           V+N +LYA P + + S G+  + + +G + +
Sbjct: 201 VINGKLYAGPEVDVWSCGIVLYVMLVGRLPF 231


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = +3

Query: 54  HTMINLARVCXLCXQLQHLXWSILNYTQNPI 146
           H +I+++++  +  +     +  +NY +NPI
Sbjct: 458 HNIISMSKIAKIMGKTMEQLYGTVNYKKNPI 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,471,274
Number of Sequences: 5004
Number of extensions: 27841
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)