Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A22
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769...    29   1.8  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     28   3.2  
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611...    28   4.3  
02_05_0264 + 27263562-27264830                                         27   7.4  

>06_02_0032 +
           10775031-10775520,10775661-10776246,10776333-10776973,
           10777270-10777973
          Length = 806

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 146 IVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 247
           ++ ++I L   GL L Y+A  R + ES GY+ A+
Sbjct: 752 VMNITIVLNLLGLLLAYMAGSRMRLESSGYFIAL 785


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 143  NIVIMSIGLTCFGLALGYIAYMRQKYESMGYY 238
            N++ ++I L   GL L Y+A  R + +S GY+
Sbjct: 908  NVMNITIVLDLLGLLLAYMAGSRMRLQSSGYF 939


>12_02_0709 -
           22359705-22360292,22360396-22360560,22360650-22361157,
           22361159-22361577,22362261-22362722,22362853-22364415
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 18  IENIIFCKQCQNHTMINLARVCXLCXQLQH 107
           + NII CKQCQ++  +++  +  +  Q QH
Sbjct: 374 VNNIIICKQCQSNKKLHMQAI-NIFTQQQH 402


>02_05_0264 + 27263562-27264830
          Length = 422

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 170 TCFGLALGYIAYMRQKYESMGYYSAIDKDGKVIFEKKKSKW 292
           T  GL++G+IA M   + +MGY +  D    +I     + W
Sbjct: 255 TTLGLSMGFIAVMYGLFGAMGYIAFGDATRDIITTNLGTGW 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,640,636
Number of Sequences: 37544
Number of extensions: 153072
Number of successful extensions: 266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)