Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A22
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   8.8  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   8.8  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   8.8  

>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 186 AKPKHVSPMLIMTILGFAYSSKLTTLNAVVXRIXRKPSPGL 64
           + P H +P++   I   ++ S+L     VV  I R P PG+
Sbjct: 307 SSPPHATPVIHAPIPQASHPSQLPPPAVVVPTIQRNPGPGI 347


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 243 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 97
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 3   AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 53


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 243 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 97
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 100 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 150


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 243 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 97
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 224 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,096,654
Number of Sequences: 27780
Number of extensions: 155398
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)