Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A21
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    30   0.32 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.2  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.2  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 272 SSIKFSLSEALYDDTFVLLLLCNNIK*SFTRTVSFCEPLATTVV 403
           S++  S S  +Y+  F+  LL +     FT  VS C P+A  V+
Sbjct: 735 SALDVSTSRKIYESCFLSTLLQHKTIILFTHNVSLCLPIAENVI 778


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 591 NLSPEHSSLFFQFRAPEPLSYCLLLPPFRIISLF 490
           N  P   S+   F AP+P    +  P F II+LF
Sbjct: 520 NSDPFKRSIQETFEAPKPFEVEMNQPSFEIIALF 553


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 345 ILLHRSNKTNVSSYNASLRLNLIEESQRTL 256
           +L++  N+T+  + N +L+LN  EE+Q  L
Sbjct: 303 LLINELNRTSFLNSNNNLKLNEAEENQNLL 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,153
Number of Sequences: 5004
Number of extensions: 53315
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)