Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A21
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    32   0.44 
12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368...    32   0.58 
02_04_0287 + 21600047-21600478                                         30   2.4  
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    29   5.4  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    28   7.2  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    28   9.5  

>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 582 VISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVIKWLGTK 758
           V+S AF+  F+AY  A NL+SS+N                  L ++     V+ WLG+K
Sbjct: 42  VLSAAFLFVFSAYCAAQNLESSVNTEGDLGTVSMGILYTSFTLFSVAASP-VVTWLGSK 99


>12_02_0806 -
           23336329-23336511,23336658-23336781,23336817-23336879,
           23336880-23336992,23337212-23337302,23337397-23337461,
           23338279-23338323,23338500-23338692,23339381-23339544,
           23339645-23339836
          Length = 410

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 582 VISLAFMTQFTAYSGAANLQSSINXXXXXXXXXXXXXXXXXILSNIFLPVFVIKWLGTK 758
           V+S AF+  F+AY  A NLQSS+N                  L  +     V+ WLG+K
Sbjct: 40  VLSAAFLFIFSAYCAAQNLQSSVNTEGDLGTVSMGILYTSFTLFAVTASP-VVTWLGSK 97


>02_04_0287 + 21600047-21600478
          Length = 143

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 622 AVRRICRAR*TLVLASEPPHWPPCTRDSSSQTYSCPYLLSSGSVRSG 762
           A  R CR R    L    PHWP    +    + + P LL  G++R+G
Sbjct: 76  ASARRCR-RCRRALERREPHWPDLAVNEELTSTAAPSLLGKGALRAG 121


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 570 KNVLVISLAFMTQFTAYSGAANLQSSIN 653
           +++ ++S AF+  F AY  A NLQS++N
Sbjct: 45  RDLHLLSSAFLFVFLAYHAAQNLQSTVN 72


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -2

Query: 360 VNDYLILLHRSNKTNVSSYNASLRLNLIE 274
           +NDY+++LH+++    +S+   LRL+L +
Sbjct: 317 INDYILILHQASNLQSASFLFFLRLDLAQ 345


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -3

Query: 770 GYRPLRTEPLDNKYGQEYV*EDESRVHGGQCGGSEASTSVYRAL 639
           G  P    PL + YG+      E    GG  GGS AS  V RA+
Sbjct: 138 GTAPRSNSPLFDDYGRSIGSTKERGGGGGGGGGSSASPKVVRAV 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,511,471
Number of Sequences: 37544
Number of extensions: 314516
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)