Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_A21
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    26   1.5  
AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox transcrip...    26   1.5  
AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    23   8.0  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 271 KPKNTFLLNKYCLGFTFRQSM 209
           K  + F+L  +C+GFT + SM
Sbjct: 131 KTTDGFMLRVFCIGFTIKDSM 151


>AF230521-1|AAF36974.2|  185|Anopheles gambiae homeobox
           transcription factor protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 469 FFFFSYLNETKIIYLISKQKYTHNGSR*WFTKRNCSCK 356
           F F  YLN  + I + S  K T    + WF  R    K
Sbjct: 25  FHFNRYLNRRRRIEIASMLKLTERQIKIWFQNRRMKAK 62


>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 641 LQIRRTAVRSELRHKRQTYHQNILH 567
           +Q+++   + +L H    YHQ + H
Sbjct: 62  IQLQQQQQQQQLHHSPHQYHQQVQH 86


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,415
Number of Sequences: 2352
Number of extensions: 12990
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)